List of works - Andrean Goede

A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome

scientific article

A conceptual mathematical model of the dynamic self-organisation of distinct cellular organelles

scientific article

Accelerating screening of 3D protein data with a graph theoretical approach

scientific article

Analysis and prediction of helix-helix interactions in membrane channels and transporters

scientific article published in July 2006

Assessment of hepatic detoxification activity: proposal of an improved variant of the (13)c-methacetin breath test

scientific article (publication date: 2013)

Coalescent angiogenesis-evidence for a novel concept of vascular network maturation

scientific article published on 14 December 2021

Comparison of 2D similarity and 3D superposition. Application to searching a conformational drug database

scientific article published in September 2004

Conservation of cis prolyl bonds in proteins during evolution.

scientific article

Conservation of substructures in proteins: interfaces of secondary structural elements in proteasomal subunits

scientific article published in June 2000

Dictionary of interfaces in proteins (DIP). Data bank of complementary molecular surface patches.

scientific article

Driving forces of proteasome-catalyzed peptide splicing in yeast and humans

scientific article

Homonyms and synonyms in the Dictionary of Interfaces in Proteins (DIP).

scientific article published in October 1999

Hydrogen-bonding and packing features of membrane proteins: functional implications

scientific article

Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins

scientific article published in November 2003

Inverse sequence similarity in proteins and its relation to the three-dimensional fold.

scientific article

Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.

scientific article published in December 2003

MP:PD--a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins

scientific article

MPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins

scientific article (publication date: July 2010)

Matching organic libraries with protein-substructures.

scientific article

Molecular packing and packing defects in helical membrane proteins

scientific article published on 19 November 2004

RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils

scientific article published on 22 May 2009

Rapid degradation of solid-phase bound peptides by the 20S proteasome

scientific article published on 28 July 2013

Representation of target-bound drugs by computed conformers: implications for conformational libraries

scientific article published on 9 June 2006

SL2: an interactive webtool for modeling of missing segments in proteins

scientific article published on 21 April 2016

SUPERFICIAL--surface mapping of proteins via structure-based peptide library design.

scientific article

Spare parts for helix–helix interaction

article

Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface

scholarly article

SuperDRUG2: a one stop resource for approved/marketed drugs

scientific article published on 11 November 2017

SuperDrug: a conformational drug database

scientific article published on 2 February 2005

SuperLigands - a database of ligand structures derived from the Protein Data Bank

scientific article

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

scientific article published on 8 May 2009

SuperMimic--fitting peptide mimetics into protein structures

scientific article

SuperPred: update on drug classification and target prediction

scientific article

Superimpose: a 3D structural superposition server

scientific article published on 20 May 2008

Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes

scientific article published on 17 November 2012

Voronoia: analyzing packing in protein structures

scientific article published on 23 October 2008

List of works by Andrean Goede

A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome

A conceptual mathematical model of the dynamic self-organisation of distinct cellular organelles

Accelerating screening of 3D protein data with a graph theoretical approach

Analysis and prediction of helix-helix interactions in membrane channels and transporters

Assessment of hepatic detoxification activity: proposal of an improved variant of the (13)c-methacetin breath test

Coalescent angiogenesis-evidence for a novel concept of vascular network maturation

Comparison of 2D similarity and 3D superposition. Application to searching a conformational drug database

Conservation of cis prolyl bonds in proteins during evolution.

Conservation of substructures in proteins: interfaces of secondary structural elements in proteasomal subunits

Dictionary of interfaces in proteins (DIP). Data bank of complementary molecular surface patches.

Driving forces of proteasome-catalyzed peptide splicing in yeast and humans

Homonyms and synonyms in the Dictionary of Interfaces in Proteins (DIP).

Hydrogen-bonding and packing features of membrane proteins: functional implications

Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins

Inverse sequence similarity in proteins and its relation to the three-dimensional fold.

Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.

MP:PD--a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins

MPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins

Matching organic libraries with protein-substructures.

Molecular packing and packing defects in helical membrane proteins

RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils

Rapid degradation of solid-phase bound peptides by the 20S proteasome

Representation of target-bound drugs by computed conformers: implications for conformational libraries

SL2: an interactive webtool for modeling of missing segments in proteins

SUPERFICIAL--surface mapping of proteins via structure-based peptide library design.

Spare parts for helix–helix interaction

Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface

SuperDRUG2: a one stop resource for approved/marketed drugs

SuperDrug: a conformational drug database

SuperLigands - a database of ligand structures derived from the Protein Data Bank

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

SuperMimic--fitting peptide mimetics into protein structures

SuperPred: update on drug classification and target prediction

Superimpose: a 3D structural superposition server

Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes

Voronoia: analyzing packing in protein structures