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List of works by Gasper Tkacik

Adaptation to changes in higher-order stimulus statistics in the salamander retina

scientific article published on 21 January 2014

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

scientific article published in April 2017

Decoding of position in the developing neural tube from antiparallel morphogen gradients.

scientific article

Decoding spike timing: the differential reverse-correlation method

scientific article published on May 2008

Diffusion, dimensionality, and noise in transcriptional regulation

scientific article published on 04 May 2009

Distributed and dynamic intracellular organization of extracellular information

scientific article published on 21 May 2018

Dynamic pathogen detection and social feedback shape collective hygiene in ants

scientific article published on 3 June 2023

Estimating information in time-varying signals

scientific article published on 03 September 2019

Evolution of new regulatory functions on biophysically realistic fitness landscapes.

scientific article published on 9 August 2017

Evolutionary potential of transcription factors for gene regulatory rewiring

scientific article published on 10 September 2018

Information capacity of genetic regulatory elements

scientific article published on 21 July 2008

Information flow and optimization in transcriptional regulation

scholarly article

Information transmission in genetic regulatory networks: a review ⬇️

scientific article published on April 20, 2011

Information-based clustering.

scientific article

Mechanisms of drug interactions between translation-inhibiting antibiotics

scientific article published on 11 August 2020

Minimal biophysical model of combined antibiotic action

scientific article published on 07 January 2021

Molecular noise of innate immunity shapes bacteria-phage ecologies

scientific article published on 02 July 2019

Multiplexed computations in retinal ganglion cells of a single type

scientific article published on 6 December 2017

Natural images from the birthplace of the human eye.

scientific article

Noise and information transmission in promoters with multiple internal States.

scientific article

Nonlinear decoding of a complex movie from the mammalian retina.

scientific article published on 10 May 2018

Optimal population coding by noisy spiking neurons

scientific article

Optimizing information flow in small genetic networks.

scientific article published on 29 September 2009

Optimizing information flow in small genetic networks. II. Feed-forward interactions

scientific article published on 06 April 2010

Optimizing information flow in small genetic networks. III. A self-interacting gene.

scientific article

Positional information, in bits

scientific article published on 02 October 2013

Positional information, positional error, and readout precision in morphogenesis: a mathematical framework

scientific article published on 31 October 2014

Precise physical models of protein-DNA interaction from high-throughput data

scientific article

Probabilistic models for neural populations that naturally capture global coupling and criticality.

scientific article published on 19 September 2017

Probabilistic models of individual and collective animal behavior.

scientific article published on 7 March 2018

Retinal metric: a stimulus distance measure derived from population neural responses

scientific article published on 28 January 2013

Scalable, Bayesian, multi-electrode spike sorting

scientific article published on 20 July 2010

Searching for collective behavior in a large network of sensory neurons

scientific article

Statistical mechanics for metabolic networks during steady state growth

scientific article published in Nature Communications

Statistical thermodynamics of natural images

scientific article published on 02 January 2013

Stimulus-dependent maximum entropy models of neural population codes.

scientific article

The role of input noise in transcriptional regulation

scientific article

Transformation of stimulus correlations by the retina

scientific article

Variance predicts salience in central sensory processing.

scientific article

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