Search filters

List of works by Pascal Auffinger

'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.

scientific article published on 5 May 2016

A comprehensive classification and nomenclature of carboxyl-carboxyl(ate) supramolecular motifs and related catemers: implications for biomolecular systems

scientific article

A short guide for molecular dynamics simulations of RNA systems.

scientific article published on 16 October 2008

An extended structural signature for the tRNA anticodon loop

scientific article

Anion binding to nucleic acids

scientific article published in March 2004

Anions in Nucleic Acid Crystallography

scientific article published on January 2016

Comment on "Evaluating Unexpectedly Short Non-covalent Distances in X-ray Crystal Structures of Proteins with Electronic Structure Analysis"

scientific article published on 19 August 2019

Deflating the RNA Mg<sup>2+</sup> bubble. Stereochemistry to the rescue!

scientific article published on 02 December 2020

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme ⬇️

scientific article published on September 1, 1997

Halogen bonds in biological molecules

scientific article

Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA

scientific article published on 01 September 2018

Melting of the solvent structure around a RNA duplex: a molecular dynamics simulation study

scientific article

Mg2+ ions: do they bind to nucleobase nitrogens?

scientific article

Molecular dynamics investigations of hammerhead ribozyme RNA

scientific article published on 01 January 1998

Nucleic acid solvation: from outside to insight.

scientific article published on 15 June 2007

Nucleobase carbonyl groups are poor Mg inner-sphere binders but excellent monovalent ion binders - A critical PDB survey

scientific article published on 08 November 2018

Protein Capsules Assembled via Isobutyramide Grafts: Sequential Growth, Biofunctionalization, and Cellular Uptake

article published in 2012

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin

scientific article published on 01 June 1997

RNA solvation: a molecular dynamics simulation perspective

scientific article published on 01 January 2000

Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops.

scientific article published on 20 December 2016

Rules governing the orientation of the 2'-hydroxyl group in RNA

scientific article published on 01 November 1997

Simulations of the molecular dynamics of nucleic acids ⬇️

scientific article published on April 1, 1998

Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes

scientific article published on 01 September 1999

Sodium and Potassium Interactions with Nucleic Acids.

scientific article published on January 2016

Spontaneous Formation of KCl Aggregates in Biomolecular Simulations: A Force Field Issue?

scientific article published on 01 September 2007

SwS: a solvation web service for nucleic acids

scientific article published on 25 February 2007

Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulations

scientific article published in January 2004

The Mg2+ binding sites of the 5S rRNA loop E motif as investigated by molecular dynamics simulations

scientific article published on 01 June 2003

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.

scientific article published on February 2001

Paulina is supported by:

About Paulina

Help