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List of works by Ezgi Karaca

A Multidomain Flexible Docking Approach to Deal with Large Conformational Changes in the Modeling of Biomolecular Complexes ⬇️

scientific article published on April 13, 2011

A mechanistic view of the role of E3 in sumoylation

scientific article

Advances in integrative modeling of biomolecular complexes

scientific article

Autosomal recessive variants in alter the γ-tubulin ring complex leading to neurodevelopmental disease

scientific article

Blind prediction of interfacial water positions in CAPRI

scientific article

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server

scientific article published on 19 March 2010

Clustering biomolecular complexes by residue contacts similarity

scientific article published on 8 May 2012

Defining distance restraints in HADDOCK

scientific article published on 25 June 2018

Defining the limits of homology modeling in information-driven protein docking

scientific article published on 17 October 2013

How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?

scientific article published on 04 January 2021

In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress

scientific article published on 15 July 2019

M3: an integrative framework for structure determination of molecular machines.

scientific article published on 14 August 2017

More Favorable Palmitic Acid Over Palmitoleic Acid Modification of Wnt3 Ensures Its Localization and Activity in Plasma Membrane Domains

scientific article published on 15 November 2019

Next challenges in protein-protein docking: from proteome to interactome and beyond

scientific article published on 28 September 2011

Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia

scientific article published on 05 June 2019

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).

scientific article published in August 2017

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

scientific article

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

scientific article

Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending

scientific article

Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance.

scientific article published on 2 March 2018

Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxin-3.

scientific article

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