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List of works by Robin M. Warren

A Global Perspective on Pyrazinamide Resistance: Systematic Review and Meta-Analysis

scientific article

A New Phylogenetic Framework for the Animal-Adapted Complex

scientific article published on 27 November 2018

A New Phylogenetic Framework for the Animal-adapted Mycobacterium tuberculosis Complex

scholarly article published 3 August 2018

A balancing act: efflux/influx in mycobacterial drug resistance

scientific article

A commercial ELISA for detection of interferon gamma in white rhinoceros

scientific article published on 11 April 2019

A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis

scientific article published on 28 December 2017

A threshold value for the time delay to TB diagnosis

scientific article

Absence of an association between Mycobacterium tuberculosis genotype and clinical features in children with tuberculous meningitis

scientific article published in January 2007

Accuracy of whole genome sequencing versus phenotypic (MGIT) and commercial molecular tests for detection of drug-resistant Mycobacterium tuberculosis isolated from patients in Brazil and Mozambique

scholarly article by Cinara Silva Feliciano et al published May 2018 in Tuberculosis

Additional data on clinical isolates of Campylobacter mucosalis.

scientific article published on September 1994

Adult-to-child transmission of tuberculosis: household or community contact?

scientific article published in May 2003

Agreement between assays of cell-mediated immunity utilizing Mycobacterium bovis-specific antigens for the diagnosis of tuberculosis in African buffaloes (Syncerus caffer)

scientific article published on 04 April 2014

Alcohol, hospital discharge, and socioeconomic risk factors for default from multidrug resistant tuberculosis treatment in rural South Africa: a retrospective cohort study

scientific article (publication date: 2013)

An interferon-gamma release assay for the diagnosis of the Mycobacterium bovis infection in white rhinoceros (Ceratotherium simum)

scientific article published on 15 August 2019

An outbreak of drug-resistant tuberculosis caused by a Beijing strain in the western Cape, South Africa

scientific article published in December 2006

Antigen-specific interferon-gamma release is decreased following the single intradermal comparative cervical skin test in African buffaloes ( Syncerus caffer )

scientific article published on 15 May 2018

Antimicrobial resistance in tuberculosis: an international perspective.

scientific article published on October 2006

Application of sensitive and specific molecular methods to uncover global dissemination of the major RDRio Sublineage of the Latin American-Mediterranean Mycobacterium tuberculosis spoligotype family

scientific article published on 30 January 2008

Assessing the progress of Mycobacterium tuberculosis H37Rv structural genomics.

scientific article published on 31 December 2014

Association of toll-like receptors with susceptibility to tuberculosis suggests sex-specific effects of TLR8 polymorphisms

scientific article published on 6 July 2015

Associations between human leukocyte antigen class I variants and the Mycobacterium tuberculosis subtypes causing disease

scientific article published on 14 August 2013

Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis.

scientific article published on 19 April 2018

Automated IS6110-based fingerprinting of Mycobacterium tuberculosis: Reaching unprecedented discriminatory power and versatility.

scientific article

Bacille Calmette-Guérin vaccine-induced disease in HIV-infected and HIV-uninfected children.

scientific article

Bacterial Genotyping of Central Nervous System Tuberculosis in South Africa: Heterogenic Mycobacterium tuberculosis Infection and Predominance of Lineage 4

scientific article published on 26 July 2019

Baseline predictors of sputum culture conversion in pulmonary tuberculosis: importance of cavities, smoking, time to detection and W-Beijing genotype

scientific article

Bedaquiline Microheteroresistance after Cessation of Tuberculosis Treatment

scientific article published on 01 May 2019

Building comprehensive MS-friendly databases for proteomic analysis of bacterial species of unknown genetic background

COVID-19 detection in cough, breath and speech using deep transfer learning and bottleneck features

scientific article published on 17 December 2021

Calculation of the stability of the IS6110 banding pattern in patients with persistent Mycobacterium tuberculosis disease

scientific article

Changing Mycobacterium tuberculosis population highlights clade-specific pathogenic characteristics.

scientific article published on 2 December 2008

Characterization of Mycobacterium orygis

scientific article published on October 2012

Characterization of W-Beijing isolates of Mycobacterium tuberculosis from the Western Cape.

scientific article published on 19 October 2013

Classification of drug-resistant tuberculosis in an epidemic area

scientific article published in July 2000

Clinical isolates of Campylobacter mucosalis.

scientific article published on October 1993

Clonal expansion of a globally disseminated lineage of Mycobacterium tuberculosis with low IS6110 copy numbers.

scientific article published on December 2004

Combining fine-needle aspiration biopsy (FNAB) and high-resolution melt analysis to reduce diagnostic delay in Mycobacterial lymphadenitis.

scientific article

Commercial products to preserve specimens for tuberculosis diagnosis: a systematic review

scientific article published on 01 July 2018

Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints

scientific article published on 4 April 2012

Comparative analysis of a putative tuberculosis-susceptibility gene, MC3R, and pseudogene sequences in cattle, African buffalo, hyena, rhinoceros and other African bovids and ruminants.

scientific article

Comparison of quantitative techniques including Xpert MTB/RIF to evaluate mycobacterial burden

scientific article

Conservation of White Rhinoceroses Threatened by Bovine Tuberculosis, South Africa, 2016-2017

scientific article published on 01 December 2018

Contribution of reinfection to recurrent tuberculosis in South African gold miners

article

Correction: The Rationale for Using Rifabutin in the Treatment of MDR and XDR Tuberculosis Outbreaks

scientific article published on 21 July 2015

Creation and characterisation of a high-copy-number version of the pAL5000 mycobacterial replicon

scientific article

Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance

scientific article published on 14 June 2017

Cytokine gene expression assay as a diagnostic tool for detection of Mycobacterium bovis infection in warthogs (Phacochoerus africanus)

scientific article published on 11 November 2019

DNA fingerprinting and molecular epidemiology of tuberculosis: use and interpretation in an epidemic setting

scientific article published in June 1999

Danish bacille Calmette-Guérin vaccine-induced disease in human immunodeficiency virus-infected children.

scientific article published on 6 October 2003

Deciphering Within-Host Microevolution of Mycobacterium tuberculosis through Whole-Genome Sequencing: the Phenotypic Impact and Way Forward

scientific article published on 27 March 2019

Demonstration of reinfection and reactivation in HIV-negative autopsied cases of secondary tuberculosis: multilesional genotyping of Mycobacterium tuberculosis utilizing IS 6110 and other repetitive element-based DNA fingerprinting

scientific article

Detecting drug-resistant tuberculosis: the importance of rapid testing

scientific article published in August 2011

Detection and Quantification of Differentially Culturable Tubercle Bacteria in Sputum from Patients with Tuberculosis.

scientific article published on 7 July 2016

Detection of Mycobacterium kansasii infection in a rhesus macaque (Macaca mulatta) using a modified QuantiFERON-TB Gold assay

scientific article published on 30 March 2010

Detection of Mycobacterium tuberculosis infection in dogs in a high-risk setting

scientific article published on 19 April 2011

Detection of Second Line Drug Resistance among Drug Resistant Mycobacterium Tuberculosis Isolates in Botswana

scientific article published on 28 October 2019

Detection of mutations in drug resistance genes of Mycobacterium tuberculosis by a dot-blot hybridization strategy

scientific article published in January 1999

Detection of natural infection with Mycobacterium intracellulare in healthy wild-caught Chacma baboons (Papio ursinus) by ESAT-6 and CFP-10 IFN-gamma ELISPOT tests following a tuberculosis outbreak

scientific article

Detection of tuberculosis by automatic cough sound analysis.

scientific article published on 15 March 2018

Detection ofMycobacterium tuberculosisinfection in chacma baboons (Papio ursinus) using the QuantiFERON-TB Gold (In-Tube) assay

scientific article published on 14 July 2009

Development of a Gene Expression Assay for the Diagnosis of Mycobacterium bovis Infection in African Lions (Panthera leo).

scientific article published on 30 October 2015

Development of a diagnostic gene expression assay for tuberculosis and its use under field conditions in African buffaloes (Syncerus caffer)

scientific article published on 19 May 2012

Diagnostic Accuracy and Utility of FluoroType MTBDR, a New Molecular Assay for Multidrug-Resistant Tuberculosis

scholarly article by Margaretha de Vos et al published September 2018 in Journal of Clinical Microbiology

Differentiation of Mycobacterium tuberculosis complex by PCR amplification of genomic regions of difference.

scientific article published in July 2006

Discordance between mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing and IS6110 restriction fragment length polymorphism genotyping for analysis of Mycobacterium tuberculosis Beijing strains in a setting of high incide

scientific article published on 20 August 2008

Disruption of coding regions by IS6110 insertion in Mycobacterium tuberculosis

scientific article published in January 1999

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes

scientific article published on 12 August 2019

Diversity of in vitro cytokine responses by human macrophages to infection by mycobacterium tuberculosis strains

scientific article

Drug resistance in Mycobacterium tuberculosis

scientific article published on 01 July 2006

Drug susceptibility testing using molecular techniques can enhance tuberculosis diagnosis.

scientific article published in February 2008

Drug-Penetration Gradients Associated with Acquired Drug Resistance in Patients with Tuberculosis

scientific article published on 01 November 2018

Drug-associated adverse events and their relationship with outcomes in patients receiving treatment for extensively drug-resistant tuberculosis in South Africa

scientific article

Drug-resistant tuberculosis epidemic in the Western Cape driven by a virulent Beijing genotype strain.

scientific article published in January 2010

Drug-resistant tuberculosis in patients with minimal symptoms: favourable outcomes in the absence of treatment.

scientific article published on May 2017

ESAT-6 and CFP-10: what is the diagnosis?

scientific article published on November 2002

Early stationary phase culture supernatant accelerates growth of sputum cultures collected after initiation of anti-tuberculosis treatment

scientific article published on 29 November 2013

Early treatment outcomes and HIV status of patients with extensively drug-resistant tuberculosis in South Africa: a retrospective cohort study

scientific article published in May 2010

Effect of study duration on the interpretation of tuberculosis molecular epidemiology investigations

scientific article published on 26 February 2009

Efflux pump inhibitors: targeting mycobacterial efflux systems to enhance TB therapy

scientific article published on 15 October 2015

Emergence and spread of extensively and totally drug-resistant tuberculosis, South Africa

scientific article published on March 2013

Emergence and treatment of multidrug resistant (MDR) and extensively drug-resistant (XDR) tuberculosis in South Africa

scientific article published on 04 August 2011

Emergence of increased resistance and extensively drug-resistant tuberculosis despite treatment adherence, South Africa

scientific article

Energy metabolism and drug efflux in Mycobacterium tuberculosis

scientific article published on 10 March 2014

Epidemic spread of multidrug-resistant tuberculosis in Johannesburg, South Africa

scientific article published on 03 April 2013

Ethambutol resistance testing by mutation detection.

scientific article published in January 2006

Evaluation of the AID TB resistance line probe assay for rapid detection of genetic alterations associated with drug resistance in Mycobacterium tuberculosis strains.

scientific article published on 08 January 2014

Evaluation of the Xpert MTB/RIF assay for the diagnosis of pulmonary tuberculosis in a high HIV prevalence setting

scientific article published on 14 April 2011

Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region

scientific article

Evidence that the Spread of Mycobacterium tuberculosis Strains with the Beijing Genotype Is Human Population Dependent.

scientific article published in July 2011

Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regions

scientific article

Evolution of rifampicin treatment for tuberculosis

scientific article published on 24 June 2019

Evolution of the IS6110-based restriction fragment length polymorphism pattern during the transmission of Mycobacterium tuberculosis.

scientific article

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

scientific article published on 19 January 2015

Exogenous reinfection as a cause of recurrent tuberculosis after curative treatment.

scientific article published in October 1999

Exploring the potential of T7 bacteriophage protein Gp2 as a novel inhibitor of mycobacterial RNA polymerase.

scientific article published on 18 July 2017

Extensively drug-resistant tuberculosis: epidemiology and management challenges

scientific article published on September 2010

False positive Xpert MTB/RIF results in re-tested patients with previous tuberculosis: frequency, profile, and prospective clinical outcomes

scientific article published on 5 January 2018

False-positive rifampicin resistance on Xpert® MTB/RIF: case report and clinical implications.

scientific article published on February 2012

Fatal Tuberculosis in a Free-Ranging African Elephant and One Health Implications of Human Pathogens in Wildlife

article

Fighting an old disease with next-generation sequencing

scientific article

Fine needle aspiration biopsy: an undervalued diagnostic modality in paediatric mycobacterial disease.

scientific article

Fluorometric assay for testing rifampin susceptibility of Mycobacterium tuberculosis complex.

scientific article published on 27 February 2008

Frequency and implications of pyrazinamide resistance in managing previously treated tuberculosis patients.

scientific article

Genetic Determinants of Drug Resistance in Mycobacterium tuberculosis and Their Diagnostic Value

scientific article published on 24 February 2016

Genetic diversity and potential routes of transmission of Mycobacterium bovis in Mozambique

scientific article published on 18 January 2018

Genetic diversity of Mycobacterium tuberculosis complex strains isolated from livestock workers and cattle in Nigeria

scientific article published on 20 February 2019

Genetic diversity of Mycobacterium tuberculosis isolated from tuberculosis patients in the Serengeti ecosystem in Tanzania

scientific article

Genetic diversity of Mycobacterium tuberculosis strains circulating in Botswana

scientific article published on 07 May 2019

Genetic profile of Mycobacterium tuberculosis and treatment outcomes in human pulmonary tuberculosis in Tanzania

scientific article published in April 2014

Genome and MIC stability in Mycobacterium tuberculosis and indications for continuation of use of isoniazid in multidrug-resistant tuberculosis.

scientific article published on October 1997

Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis

scientific article

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

scientific article published on September 2013

Genotype MTBDRsl line probe assay shortens time to diagnosis of extensively drug-resistant tuberculosis in a high-throughput diagnostic laboratory

scientific article published on 18 October 2012

Genotypic and Phenotypic Characterization of Drug-Resistant Mycobacterium tuberculosis Isolates from Rural Districts of the Western Cape Province of South Africa.

scientific article published in April 2004

Genotypic and phenotypic characterization of drug-resistant Mycobacterium tuberculosis isolates from rural districts of the Western Cape Province of South Africa.

scientific article

Genotypic diversity of extensively drug-resistant tuberculosis (XDR-TB) in South Africa.

scientific article published in January 2008

Geographical differences associated with single-nucleotide polymorphisms (SNPs) in nine gene targets among resistant clinical isolates of Mycobacterium tuberculosis.

scientific article published on 19 June 2013

Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa

scientific article published in PLoS ONE

Global control of tuberculosis: from extensively drug-resistant to untreatable tuberculosis

scientific article

Guidance for Studies Evaluating the Accuracy of Rapid Tuberculosis Drug-Susceptibility Tests

scientific article published on 01 October 2019

HIV-1 and tuberculosis infection

scientific article published in May 2002

High frequency of resistance, lack of clinical benefit, and poor outcomes in capreomycin treated South African patients with extensively drug-resistant tuberculosis

scientific article

High yield of culture-based diagnosis in a TB-endemic setting

scientific article

IP-10: A potential biomarker for detection of Mycobacterium bovis infection in warthogs ( Phacochoerus africanus )

scientific article published on 21 May 2018

IS 6110 -Mediated Deletion Polymorphism in the Direct Repeat Region of Clinical Isolates of Mycobacterium tuberculosis ⬇️

scientific article published on May 1, 2003

IS6110 insertions in Mycobacterium tuberculosis: predominantly into coding regions.

scientific article published on September 2001

Identification of MDR-TB Beijing/W and other Mycobacterium tuberculosis genotypes in Nairobi, Kenya.

scientific article

Impact of Mycobacterium bovis-induced pathology on interpretation of QuantiFERON®-TB Gold assay results in African buffaloes (Syncerus caffer)

scientific article published on 08 August 2019

Impact of alcohol consumption on tuberculosis treatment outcomes: a prospective longitudinal cohort study protocol

scholarly article by Bronwyn Myers et al published 29 September 2018 in BMC Infectious Diseases

Implementation of genotype MTBDRplus reduces time to multidrug-resistant tuberculosis therapy initiation in South Africa

scientific article published on 22 October 2012

Implementation of new tools for multidrug-resistant tuberculosis detection and control

scientific article published on 21 September 2016

Implications of Failure to Routinely Diagnose Resistance to Second-Line Drugs in Patients With Rifampicin-Resistant Tuberculosis on Xpert MTB/RIF: A Multisite Observational Study

scientific article published on 12 February 2017

Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region

scientific article

Infection of African buffalo (Syncerus caffer) by oryx bacillus, a rare member of the antelope clade of the Mycobacterium tuberculosis complex

scientific article published in October 2012

Insertion element IS6110-based restriction fragment length polymorphism genotyping of Mycobacterium tuberculosis

scientific article

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

scientific article published in Scientific Reports

Iron acquisition strategies in mycobacteria.

scientific article

Isolation and Potential for Transmission of Mycobacterium bovis at Human-livestock-wildlife Interface of the Serengeti Ecosystem, Northern Tanzania

scientific article

Isolation of DNA from Mycobacterium tubercolosis.

scientific article

Isoniazid Resistance and Dosage as Treatment for Patients with Tuberculosis

scientific article

LONG TERM BEDAQUILINE-RELATED TREATMENT OUTCOMES IN PATIENTS WITH EXTENSIVELY DRUG RESISTANT TUBERCULOSIS FROM SOUTH AFRICA.

scientific article published on 26 April 2018

Linezolid Pharmacokinetics in South African Patients with Drug-Resistant Tuberculosis and a High Prevalence of HIV Coinfection

scientific article published on 26 February 2019

Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area

scientific article published in January 2003

Localisation of mycobacterial DNA and mRNA in human tuberculous granulomas

scientific article published in October 2002

Long-term outcomes of patients with extensively drug-resistant tuberculosis in South Africa: a cohort study

scientific article published on 17 January 2014

Low Frequency of Acquired Isoniazid and Rifampicin Resistance in Rifampicin-Susceptible Pulmonary Tuberculosis in a Setting of High HIV-1 Infection and Tuberculosis Coprevalence

scientific article published on September 2017

MDR tuberculosis control: time to change the dogma?

scientific article published on 17 November 2015

Mapping of IS6110 flanking regions in clinical isolates of Mycobacterium tuberculosis demonstrates genome plasticity.

scientific article published on September 2000

Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries

scientific article

Measuring antigen-specific responses in Mycobacterium bovis-infected warthogs (Phacochoerus africanus) using the intradermal tuberculin test

article

Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data.

scientific article

Minority Mycobacterium tuberculosis Genotypic Populations as an Indicator of Subsequent Phenotypic Resistance

scientific article published on 01 December 2019

Mixed Mycobacterium tuberculosis-Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis, Independent of Pretreatment Heteroresistance

scholarly article by Sanghyuk S Shin et al published 5 November 2018 in Journal of Infectious Diseases

Mixed-strain mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control

scientific article

Modification of the QuantiFERON-TB Gold (In-Tube) assay for the diagnosis of Mycobacterium bovis infection in African buffaloes (Syncerus caffer)

scientific article published on 20 April 2011

Molecular Analysis of Clinical Isolates of Mycobacterium tuberculosis Collected from Patients with Persistent Disease in the Khartoum Region of Sudan

article

Molecular Detection of Early Appearance of Drug Resistance during Mycobacterium tuberculosis Infection

scholarly article by Thomas C. Victor et al published 24 January 2002 in Clinical Chemistry and Laboratory Medicine

Molecular Epidemiological Interpretation of the Epidemic of Extensively Drug-Resistant Tuberculosis in South Africa.

scientific article

Molecular characteristics and global spread of Mycobacterium tuberculosis with a western cape F11 genotype

scientific article

Molecular diversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Sri Lanka.

scientific article published on 29 May 2008

Molecular epidemiology of Mycobacterium bovis isolates from free-ranging wildlife in South African game reserves

scientific article

Moxifloxacin retains antimycobacterial activity in the presence of gyrA mutations

scientific article published on 10 February 2014

Multiple Mycobacterium tuberculosis strains in early cultures from patients in a high-incidence community setting

scientific article

Multiple, independent, identical IS6110 insertions in Mycobacterium tuberculosis PPE genes

article

Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis.

scientific article published on 26 September 2013

Mutations in ppe38 block PE_PGRS secretion and increase virulence of Mycobacterium tuberculosis

scientific article published on 15 January 2018

Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype

scientific article published on 28 January 2011

Mutations in the rrs A1401G Gene and Phenotypic Resistance to Amikacin and Capreomycin in Mycobacterium tuberculosis

article

Mycobacterial genomic DNA from used Xpert MTB/RIF cartridges can be utilised for accurate second-line genotypic drug susceptibility testing and spoligotyping

scientific article published in November 2017

Mycobacterial genotype is associated with disease phenotype in children

article

Mycobacterial interspersed repetitive-unit-variable-number tandem-repeat analysis and Beijing/W family of Mycobacterium tuberculosis.

scientific article published on July 2011

Mycobacterial nucleoid associated proteins: An added dimension in gene regulation

article

Mycobacterial transport medium for routine culture of fine needle aspiration biopsies.

scientific article published on 31 August 2009

Mycobacterium africanum is not a major cause of human tuberculosis in Cape Town, South Africa

article

Mycobacterium tuberculosis Beijing genotype is associated with HIV infection in Mozambique

scientific article (publication date: 2013)

Mycobacterium tuberculosis Beijing genotype: a template for success.

scientific article published on 10 August 2011

Mycobacterium tuberculosis Population Structure Determines the Outcome of Genetics-Based Second-Line Drug Resistance Testing ⬇️

scientific article published on February 13, 2012

Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance.

scientific article published on 11 September 2017

Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology

scientific article (publication date: 6 March 2006)

Mycobacterium tuberculosis pncA Polymorphisms That Do Not Confer Pyrazinamide Resistance at a Breakpoint Concentration of 100 Micrograms per Milliliter in MGIT.

scientific article

Mycobacterium tuberculosis resistance in pulmonary TB patients in Cameroon: a phenotypic susceptibility assay

scientific article published in July 2015

Mycobacterium tuberculosis strains with the Beijing genotype demonstrate variability in virulence associated with transmission.

scientific article

Mycobacterium tuberculosis transmission is not related to household genotype in a setting of high endemicity

scientific article published on 04 March 2009

Nosocomial transmission of Mycobacterium tuberculosis in kangaroo mother care units: a risk in tuberculosis-endemic areas

scientific article published in May 2006

Novel Mycobacterium tuberculosis complex pathogen, M. mungi

scientific article

Novel cause of tuberculosis in meerkats, South Africa

scientific article published on December 2013

Of Testing and Treatment: Implications of Implementing New Regimens for Multidrug-Resistant Tuberculosis

scientific article published in October 2017

Oligonucleotide (GTG)5 as an epidemiological tool in the study of nontuberculous mycobacteria.

scientific article published on June 1997

On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics

scientific article published on 20 June 2019

Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study

scientific article

Overcoming limitations of tuberculosis information systems: researcher and clinician perspectives

scientific article published on 01 September 2019

Papanicolaou induced fluorescence, Ziehl-Neelsen and Auramine O stains on lymph node fine needle aspiration biopsy specimens from children: A comparative study.

scientific article published on 3 May 2018

Parallel measurement of IFN-γ and IP-10 in QuantiFERON®-TB Gold (QFT) plasma improves the detection of Mycobacterium bovis infection in African buffaloes (Syncerus caffer)

scientific article published on 23 May 2019

Patients with active tuberculosis often have different strains in the same sputum specimen

scientific article published on 30 December 2003

Phage-based detection of bacterial pathogens.

scientific article published on June 2014

Phosphoproteomics analysis of a clinical Mycobacterium tuberculosis Beijing isolate: expanding the mycobacterial phosphoproteome catalog

scientific article

Phylogeny to function: PE/PPE protein evolution and impact on Mycobacterium tuberculosis pathogenicity.

scientific article

Population structure of mixed Mycobacterium tuberculosis infection is strain genotype and culture medium dependent

scientific article

Population structure of multi- and extensively drug-resistant Mycobacterium tuberculosis strains in South Africa

scientific article

Potential of rapid diagnosis for controlling drug-susceptible and drug-resistant tuberculosis in communities where Mycobacterium tuberculosis infections are highly prevalent

scientific article published on 18 March 2009

Predicting Reinfection in Tuberculosis

scientific article published on 01 January 2008

Prediction of drug resistance in M. tuberculosis: molecular mechanisms, tools, and applications

scientific article

Predominance of a single genotype of Mycobacterium tuberculosis in regions of Southern Africa

scientific article

Prevalence of pyrazinamide resistance across the spectrum of drug resistant phenotypes of Mycobacterium tuberculosis

scientific article published on 30 May 2016

Prevalence, Predictors, and Successful Treatment Outcomes of Xpert MTB/RIF-identified Rifampicin-resistant Tuberculosis in Post-conflict Eastern Democratic Republic of the Congo, 2012-2017: A Retrospective Province-Wide Cohort Study

scientific article published on 01 September 2019

Primary and postprimary or reactivation tuberculosis: time to revise confusing terminology?

scientific article

Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem.

scientific article published on 12 April 2017

Programmatically selected multidrug-resistant strains drive the emergence of extensively drug-resistant tuberculosis in South Africa

scientific article (publication date: 2013)

Proportion of tuberculosis transmission that takes place in households in a high-incidence area

scientific article published in The Lancet

Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates

scientific article published on 30 October 2013

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates

scientific article published on 18 August 2017

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database

scientific article

Pulmonary Mycobacterium tuberculosis (Beijing strain) infection in a stray dog.

scientific article published in June 2008

Pulmonary infection due to the dassie bacillus (Mycobacterium tuberculosis complex sp.) in a free-living dassie (rock hyrax-Procavia capensis) from South Africa

scientific article published on 22 October 2007

Rapid Detection of Mycobacterium tuberculosis Beijing Genotype Strains by Real-Time PCR

scholarly article by Doris Hillemann et al published 1 September 2006 in Journal of Clinical Microbiology

Rapid diagnosis of pediatric mycobacterial lymphadenitis using fine needle aspiration biopsy

scientific article published on September 2014

Rapid sequencing of the Mycobacterium tuberculosis pncA gene for detection of pyrazinamide susceptibility

scientific article

Rate of reinfection tuberculosis after successful treatment is higher than rate of new tuberculosis

scientific article published on 14 April 2005

Recovery of Mycobacterium tuberculosis from positive mycobacterium growth indicator tubes stored at room temperature for up to 6 years in low-income and High-Tuberculosis-Burden Country

scientific article published on 01 April 2019

Recurrent culture-confirmed tuberculosis in human immunodeficiency virus-infected children

scientific article

Regulatory T Cells Subvert Mycobacterial Containment in Patients Failing Extensively Drug-resistant TB Treatment

scientific article published on 9 February 2018

Reinfection and mixed infection cause changing Mycobacterium tuberculosis drug-resistance patterns

scientific article published on 09 June 2005

Resistance to pyrazinamide and ethambutol compromises MDR/XDR-TB treatment

scientific article published in November 2009

Resistant Mycobacterium bovis Bacillus Calmette-Guérin disease: implications for management of Bacillus Calmette-Guérin Disease in human immunodeficiency virus-infected children

scientific article published in May 2004

Reverse zoonotic tuberculosis transmission from an emerging Uganda I strain between pastoralists and cattle in South-Eastern Nigeria

scientific article published on 04 December 2019

Revisiting the evolution of Mycobacterium bovis

scientific article

Rifampicin reduces susceptibility to ofloxacin in rifampicin-resistant Mycobacterium tuberculosis through efflux

scientific article published on 21 April 2011

Rise in rifampicin-monoresistant tuberculosis in Western Cape, South Africa.

scientific article published on February 2012

Rv1460, a SufR homologue, is a repressor of the suf operon in Mycobacterium tuberculosis

scientific article published in PLoS ONE

Rv2629 191A/C nucleotide change is not associated with rifampicin resistance in Mycobacterium tuberculosis

scientific article

SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes

scientific article

Safe Mycobacterium tuberculosis DNA extraction method that does not compromise integrity

scientific article published in January 2006

Sequence polymorphism in the rrs gene of Mycobacterium tuberculosis is deeply rooted within an evolutionary clade and is not associated with streptomycin resistance

scientific article published on November 2001

Spatial Network Mapping of Pulmonary Multidrug-Resistant Tuberculosis Cavities Using RNA Sequencing

scientific article published on 01 August 2019

Specificities and functions of the recA and pps1 intein genes of Mycobacterium tuberculosis and application for diagnosis of tuberculosis

scientific journal article

Spoligotype Signatures in the Mycobacterium tuberculosis Complex.

scientific article published in September 2007

Spoligotype signatures in the Mycobacterium tuberculosis complex.

scientific article published on 25 October 2006

Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence

scientific article published on 13 February 2008

Spread of an emerging Mycobacterium tuberculosis drug-resistant strain in the western Cape of South Africa

article

Stability of polymorphic GC-rich repeat sequence-containing regions of Mycobacterium tuberculosis

scientific article published on March 2004

Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis

scientific article

Strain families of Mycobacterium tuberculosis

scientific article published in April 2002

Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains.

scientific article published on 22 July 2013

Survival and re-aerosolization in dust of Mycobacterium smegmatis, a surrogate marker for Mycobacterium tuberculosis.

scientific article published on 16 June 2015

Switching to bedaquiline for treatment of rifampicin-resistant tuberculosis in South Africa: A retrospective cohort analysis

scientific article published on 17 October 2019

Test Characteristics of Assays to Detect Mycobacterium bovis Infection in High-Prevalence African Buffalo (Syncerus caffer) Herds

scientific article published on 21 November 2019

The "Source" of Drug-Resistant TB Outbreaks

scientific article

The Risk of Tuberculosis Reinfection Soon after Cure of a First Disease Episode Is Extremely High in a Hyperendemic Community

scientific article published on 9 December 2015

The clinical relevance of Mycobacterial pharmacogenetics.

scientific article published in May 2009

The diagnostic performance of the GenoType MTBDRplus version 2 line probe assay is equivalent to that of the Xpert MTB/RIF assay

scientific article

The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis

scientific article

The evaluation of candidate biomarkers of cell-mediated immunity for the diagnosis of Mycobacterium bovis infection in African buffaloes (Syncerus caffer).

scientific article published on 26 October 2014

The microbiome and tuberculosis: state of the art, potential applications, and defining the clinical research agenda

scientific article published on 22 March 2019

The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa

scientific article

The plasmid-mediated evolution of the mycobacterial ESX (Type VII) secretion systems

scientific article

The potential use of rifabutin for treatment of patients diagnosed with rifampicin-resistant tuberculosis

scientific article published on 01 October 2018

The rationale for using rifabutin in the treatment of MDR and XDR tuberculosis outbreaks

scientific article

The role of IS6110 in the evolution of Mycobacterium tuberculosis

scientific article published on 12 July 2007

The role of molecular epidemiology in low-income, high-burden countries

scientific article published on 01 April 2009

The stability of plasma IP-10 enhances its utility for the diagnosis of Mycobacterium bovis infection in African buffaloes (Syncerus caffer).

scientific article published on 25 March 2016

The temporal dynamics of relapse and reinfection tuberculosis after successful treatment: a retrospective cohort study

scientific article published on 18 March 2014

The use of light-emitting diode fluorescence to diagnose mycobacterial lymphadenitis in fine-needle aspirates from children.

scientific article

Transmission of a multidrug-resistant Mycobacterium tuberculosis strain resembling "strain W" among noninstitutionalized, human immunodeficiency virus-seronegative patients.

scientific article published in November 1999

Transmission of drug-resistant tuberculosis in HIV-endemic settings

article

Transmission of multidrug-resistant strains of Mycobacterium tuberculosis in a high incidence community

scientific article

Transmission of tuberculosis in a high incidence urban community in South Africa

scientific article published on April 2004

Treatment outcomes of isoniazid-resistant tuberculosis patients, Western Cape Province, South Africa

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Use of simulated sputum specimens to estimate the specificity of laboratory-diagnosed tuberculosis

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Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates

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Xpert MTB/RIF for rapid diagnosis of tuberculous lymphadenitis from fine-needle-aspiration biopsy specimens

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Xpert MTB/RIF on Stool Is Useful for the Rapid Diagnosis of Tuberculosis in Young Children With Severe Pulmonary Disease

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Xpert MTB/RIF performance to diagnose tuberculosis and rifampicin resistance in a reference centre in southern Brazil

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embB306 mutations as molecular indicators to predict ethambutol susceptibility in Mycobacterium tuberculosis

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gyrA mutations and phenotypic susceptibility levels to ofloxacin and moxifloxacin in clinical isolates of Mycobacterium tuberculosis

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inhA promoter mutations: a gateway to extensively drug-resistant tuberculosis in South Africa?

scientific article published in March 2011

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