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List of works by Luiz L Coutinho

A comprehensive manually-curated compendium of bovine transcription factors

scientific article published in Scientific Reports

A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens.

scientific article published on 21 May 2018

A genome-wide scan for selection signatures in Nellore cattle.

scientific article published on 3 September 2014

A genomewide association mapping study using ultrasound-scanned information identifies potential genomic regions and candidate genes affecting carcass traits in Nellore cattle.

scientific article published on 27 May 2015

A single nucleotide polymorphism in NEUROD1 is associated with production traits in Nelore beef cattle.

scientific article published on 14 July 2016

Abundance of MyoD and myostatin transcripts in chicken embryos submitted to distinct incubation temperatures and timing exposures

scientific article published on 01 May 2011

Allele- and parent-of-origin-specific effects on expression of the KCNJ11 gene: A candidate for meat tenderness in cattle.

scientific article published on 29 August 2016

Allele-specific expression is widespread in Bos indicus muscle and affects meat quality candidate genes

scientific article published on 23 June 2020

An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle

scientific article published in Scientific Reports

Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane

scientific article

Analysis of copy number variations among diverse cattle breeds.

scientific article

Appetite regulating factors in pacu (Piaractus mesopotamicus): Tissue distribution and effects of food quantity and quality on gene expression

scientific article published on 4 October 2016

Assessing the accuracy of prediction for milk fatty acids by using a small reference population of tropical Holstein cows

scientific article published on 29 August 2019

Assignment 1 of the bovine PTGFR and HSD3B1 genes to bovine chromosome 3 with somatic and radiation hybrid panel mapping

article

Assignment 1 of the subunit C of succinate dehydrogenase complex (SDHC) gene to bovine chromosome 2 with somatic and radiation hybrid panel mapping

article

Association of IGF1 and KDM5A polymorphisms with performance, fatness and carcass traits in chickens

scientific article published on 30 December 2012

Associations of myostatin gene polymorphisms with performance and mortality traits in broiler chickens

scientific article published on 11 January 2007

Candidate gene analysis of GH1 for effects on growth and carcass composition of cattle.

scientific article

Carcass and meat quality traits of chickens fed diets concurrently supplemented with vitamins C and E under constant heat stress.

scientific article published in January 2016

Check-All-That-Apply method for sensory characterization of pork from immunocastrated male pigs fed different oil sources

scientific article published in 2023

Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

scientific article

Comparative muscle transcriptome associated with carcass traits of Nellore cattle.

scientific article

Comparison of the genomes of two Xanthomonas pathogens with differing host specificities

scientific article

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane.

scientific article published on 12 June 2015

Composite interval mapping and mixed models reveal QTL associated with performance and carcass traits on chicken chromosomes 1, 3, and 4.

scientific article

Copy number variations and genome-wide associations reveal putative genes and metabolic pathways involved with the feed conversion ratio in beef cattle

scientific article

Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

scientific article published on 5 April 2017

Cytokine gene expression in response to Haemonchus placei infections in Nelore cattle.

scientific article published on 19 March 2010

DNA methylation profiles in red blood cells of adult hens correlate to their rearing conditions.

scientific article

Data from proteomic analysis of bovine Longissimus dorsi muscle associated with intramuscular fat content

scientific article published on 09 June 2018

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

scientific article

Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle

scientific article published on 13 March 2019

Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

scientific article

Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues

scientific article

Dynamic remodeling of endometrial extracellular matrix regulates embryo receptivity in cattle.

scientific article published on 17 October 2016

EDA mutation by exome sequencing in non-syndromic X-linked oligodontia.

scientific article

EST analysis of mRNAs expressed during embryogenesis in Gallus gallus.

scientific article published in June 2004

Effects of increasing dietary oil inclusion from different sources on growth performance, carcass and meat quality traits, and fatty acid profile in genetically lean immunocastrated male pigs

scientific article published in 2021

Endometrial transcriptional profiling of a bovine fertility model by Next-Generation Sequencing

scientific article published on 10 November 2015

Erratum to: 'Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle'.

scientific article published on 13 July 2016

Erratum to: Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle

scientific article published on 28 April 2016

Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep.

scientific article published on 21 May 2018

Evaluation of imputation accuracy using the combination of two high-density panels in Nelore beef cattle

scientific article published on 29 November 2019

Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.

scientific article published in March 2004

Evaluation of reference genes for real-time PCR studies of Brazilian Somalis sheep infected by gastrointestinal nematodes ⬇️

scientific article published on July 2010

Expression of 1alpha-HYD and 24-HYD in bovine kidney mediated by vitamin D3 supplementation.

scientific article

Field study on nematode resistance in Nelore-breed cattle

scientific article published on 30 July 2007

Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle

article

Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle

article

Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

scientific article published on 22 December 2016

Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

scientific article

Gene expression profile suggesting immunological dysregulation in two Brazilian Bloom's syndrome cases

scientific article published on 19 February 2020

Gene expression profiling by high throughput sequencing to determine signatures for the bovine receptive uterus at early gestation.

scientific article published on 3 June 2015

Genetic parameters for growth characteristics of free-range chickens under univariate random regression models.

scientific article

Genetic parameters for milk fatty acids, milk yield and quality traits of a Holstein cattle population reared under tropical conditions

scientific article published on 9 March 2016

Genetic regulators of mineral amount in Nelore cattle muscle predicted by a new co-expression and regulatory impact factor approach

scientific article published on 21 May 2020

Genetic variants in glucocorticoid and mineralocorticoid receptors are associated with concentrations of plasma cortisol, muscle glycogen content, and meat quality traits in male Nellore cattle

scientific article published on 20 December 2014

Genome scan for meat quality traits in Nelore beef cattle

scientific article published on 10 September 2013

Genome wide scan for quantitative trait loci affecting tick resistance in cattle (Bos taurus x Bos indicus).

scientific article

Genome-Enabled Prediction of Breeding Values for Feedlot Average Daily Weight Gain in Nelore Cattle.

scientific article

Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle

scientific article (publication date: 2016)

Genome-wide association analysis of feed intake and residual feed intake in Nellore cattle

scientific article

Genome-wide association study for feedlot average daily gain in Nellore cattle (Bos indicus)

scientific article published on 20 February 2014

Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle.

scientific article

Genome-wide association study for milk production traits in a Brazilian Holstein population

scientific article published on 21 March 2019

Genome-wide association study for performance traits in chickens using genotype by sequencing approach.

scientific article published on 09 February 2017

Genome-wide association study reveals genes associated with the absence of intermuscular bones in tambaqui (Colossoma macropomum)

scientific article published on 01 October 2020

Genome-wide association with residual body weight gain in Bos indicus cattle.

scientific article published on 18 May 2015

Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines

scientific article

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

scientific article

Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle

scientific article

Genotypic and allelic frequencies of gene polymorphisms associated with meat tenderness in Nellore beef cattle.

scientific article published on 16 February 2017

Genotyping BoLA-DRB3 alleles in Brazilian Dairy Gir cattle (Bos indicus) by temperature-gradient gel electrophoresis (TGGE) and direct sequencing

scientific article published in February 2004

Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes

scientific article

Heat and chemical stress modulate the expression of the alpha-RYR gene in broiler chickens.

scientific article published on 29 June 2010

Heat shock and structural proteins associated with meat tenderness in Nellore beef cattle, a Bos indicus breed.

scientific article

High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing

scientific article published on 25 May 2016

Identification and association of polymorphisms in CAPN1 and CAPN3 candidate genes related to performance and meat quality traits in chickens

article

Identification and characterization of microRNAs expressed in chicken skeletal muscle.

scientific article

Identification of KCNJ11 as a functional candidate gene for bovine meat tenderness.

scientific article

Identification of genomic regions associated with feed efficiency in Nelore cattle

scientific article

Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.

scientific article published on 9 September 2015

Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.

scientific article

Identification of selection signatures involved in performance traits in a paternal broiler line.

scientific article published on 3 June 2019

Immunological responses and cytokine gene expression analysis to Cooperia punctata infections in resistant and susceptible Nelore cattle

article

Impact of exposure time to harsh environments on physiology, mortality, and thermal comfort of day-old chickens in a simulated condition of transport

scientific article published on 22 February 2019

Impact of hormonal modulation at proestrus on ovarian responses and uterine gene expression of suckled anestrous beef cows

scientific article published in November 2017

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.

scientific article published on 18 September 2013

Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken

scientific article published in Scientific Reports

Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle.

scientific article published on 7 February 2018

Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma.

scientific article published on 12 April 2016

Interplay among miR-29 family, mineral metabolism, and gene regulation in Bos indicus muscle

scientific article published on 22 May 2020

Investigation of mechanisms involved in regulation of progesterone catabolism using an overfed versus underfed ewe-lamb model.

scientific article published in December 2017

Iron Content Affects Lipogenic Gene Expression in the Muscle of Nelore Beef Cattle

scientific article (publication date: 2016)

Large-scale SNP discovery and construction of a high-density genetic map of Colossoma macropomum through genotyping-by-sequencing

scientific article published on 07 April 2017

Linkage disequilibrium in Brazilian Santa Inês breed, Ovis aries.

scientific article

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

scientific article

Longissimus dorsi muscle label-free quantitative proteomic reveals biological mechanisms associated with intramuscular fat deposition.

scientific article published on 3 March 2018

Low-intensity resistance training with partial blood flow restriction and high-intensity resistance training induce similar changes in skeletal muscle transcriptome in elderly humans

scientific article published on 12 July 2018

Macrogeographic genetic variation in broad-snouted caiman (Caiman latirostris).

scientific article published in December 2008

Mapping QTLs on chicken chromosome 1 for performance and carcass traits in a broiler x layer cross

scientific article published on 01 April 2006

Mapping of quantitative trait loci controlling tick [Riphicephalus (Boophilus) microplus] resistance on bovine chromosomes 5, 7 and 14.

scientific article published on October 2007

MiRNAs differentially expressed in skeletal muscle of animals with divergent estimated breeding values for beef tenderness

article

MicroRNA Expression Profiles Discriminate Childhood T- from B-Acute Lymphoblastic Leukemia

scientific article published on 27 November 2018

Microgeographic variation in Caiman latirostris.

scientific article published in December 2002

Microsatellite DNA library for Caiman latirostris.

scientific article published in December 2002

Molecular evolution of ribosomal intergenic spacers in Odontophrynus americanus 2n and 4n (Amphibia: Anura)

scientific article published on 01 February 2002

Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus

scientific article published on 03 September 2019

Mutation dynamics of CpG dinucleotides during a recent event of vertebrate diversification.

scientific article published on 9 May 2019

Next-Generation Sequencing of the Complete Mitochondrial Genome of the Endangered Species Black Lion Tamarin Leontopithecus chrysopygus (Primates) and Mitogenomic Phylogeny Focusing on the Callitrichidae Family

scientific article published on 12 April 2018

Oviductal transcriptional profiling of a bovine fertility model by next-generation sequencing

scientific article

Parentage test in broad-snouted caimans (Caiman latirostris, Crocodylidae) using microsatellite DNA ⬇️

scientific article

Permanent genetic resources added to molecular ecology resources database 1 October 2012-30 November 2012.

scientific article published on 25 January 2013

Polymorphisms in FGFBP1 and FGFBP2 genes associated with carcass and meat quality traits in chickens.

scientific article published on 24 January 2013

Precision of distances and ordering of microsatellite markers in consensus linkage maps of chromosomes 1, 3 and 4 from two reciprocal chicken populations using bootstrap sampling

scientific article published on 13 July 2010

Putative regulatory factors associated with intramuscular fat content

scientific article (publication date: 2015)

QTL for percentage of carcass and carcass parts in a broiler x layer cross

scientific article published on 30 September 2010

Quantitative characterization of beta-adrenergic receptor subtypes in porcine adipocytes

scientific article published in April 1992

Quantitative trait loci associated with chemical composition of the chicken carcass

article

Quantitative trait loci associated with fatness in a broiler-layer cross.

scientific article published on 16 May 2009

Quantitative trait loci for morphometric and mineral composition traits of the tibia bone in a broiler × layer cross

scientific article published on 07 January 2019

Quantitative trait loci for performance traits in a broiler × layer cross

scientific article published on 20 January 2008

Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross.

scientific article published on 24 October 2015

RGMa and RGMb expression pattern during chicken development suggest unexpected roles for these repulsive guidance molecules in notochord formation, somitogenesis, and myogenesis.

scientific article published on 6 November 2012

RNA-Seq transcriptome analysis shows anti-tumor actions of melatonin in a breast cancer xenograft model

scientific article published in Scientific Reports

Real-time polymerase chain reaction quantification of Porphyromonas gingivalis and Tannerella forsythia in primary endodontic infections

scientific article published in November 2009

Relationship of runs of homozygosity with adaptive and production traits in a paternal broiler line

scientific article published on 25 October 2017

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

scientific article (publication date: 3 November 2009)

Response of resistant and susceptible Brazilian Somalis crossbreed sheep naturally infected by Haemonchus contortus

scientific article published on 15 January 2014

SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition

scientific article published on 18 February 2015

Single nucleotide polymorphisms in the growth hormone and IGF type-1 (IGF1) genes associated with carcass traits in Santa Ines sheep

scientific article published on 06 July 2018

Size of the Ovulatory Follicle Dictates Spatial Differences in the Oviductal Transcriptome in Cattle

scientific article

Supplementation with small-extracellular vesicles from ovarian follicular fluid during in vitro production modulates bovine embryo development

scientific article

The 18S rRNA from Odontophrynus americanus 2n and 4n (Amphibia, Anura) reveals unusual extra sequences in the variable region V2

The Bos taurus-Bos indicus balance in fertility and milk related genes.

scientific article

The Receptive Endometrial Transcriptomic Signature Indicates an Earlier Shift from Proliferation to Metabolism at Early Diestrus in the Cow.

scientific article

The transcriptome signature of the receptive bovine uterus determined at early gestation

scientific article

Transcriptome changes in muscle of Nellore cows submitted to recovery weight gain under grazing condition

scientific article published on 09 July 2018

Unraveling genomic associations with feed efficiency and body weight traits in chickens through an integrative approach

scientific article published on 06 November 2019

Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens.

scientific article published on 23 January 2015

Variants in GH, IGF1, and LEP genes associated with body traits in Santa Inês sheep

scientific article published in 2021

Variants in myostatin and MyoD family genes are associated with meat quality traits in Santa Inês sheep

scientific article published on 07 July 2020

Variation in myogenic differentiation 1 mRNA abundance is associated with beef tenderness in Nelore cattle.

scientific article

Whole transcriptome analysis of the pectoralis major muscle reveals molecular mechanisms involved with white striping in broiler chickens

scientific article published on 01 February 2019

Whole-genome analysis for backfat thickness in a tropically adapted, composite cattle breed from Brazil

article

Widespread modulation of gene expression by copy number variation in skeletal muscle

scientific article

mRNA profile of Nellore calves after primary infection with Haemonchus placei ⬇️

scientific article published on November 19, 2010

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