List of works - Grzegorz Kudła

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

scientific article published on 19 June 2014

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

scientific article

Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

scientific article published in November 2012

COMRADES determines in vivo RNA structures and interactions

scientific article published on 10 September 2018

Coding-sequence determinants of gene expression in Escherichia coli

scientific article

Codon optimization of antigen coding sequences improves the immune potential of DNA vaccines against avian influenza virus H5N1 in mice and chickens

scientific article

Codon usage influences fitness through RNA toxicity

article published in the Proceedings of the National Academy of Sciences of the United States of America

Codon usage influences fitness through RNA toxicity

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

scientific article

Evidence for strong mutation bias towards, and selection against, T/U content in SARS-CoV2: implications for attenuated vaccine design

scientific article published on 12 May 2020

Evidence for the biogenesis of more than 1,000 novel human microRNAs

scientific article

Gene conversion and GC-content evolution in mammalian Hsp70.

scientific article

Genome landscapes and bacteriophage codon usage

scientific article

Global mapping of RNA homodimers in living cells

scientific article published on 24 March 2022

High guanine and cytosine content increases mRNA levels in mammalian cells

scientific article

Hsp90 chaperones wild-type p53 tumor suppressor protein

scientific article published on 9 September 2004

Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data

scientific article

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

scholarly article

Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II.

scientific article published on January 2004

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery

scientific article

Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough

scientific article published on 22 December 2015

Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors

scientific article

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding

scientific article published on April 2013

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target

scientific article published on 19 December 2011

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate

scientific article published on March 2017

N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3'-end processing

scientific article published on 30 August 2017

Network of epistatic interactions within a yeast snoRNA.

scientific article published on 14 April 2016

PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

scientific article

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit

scientific article published on 13 October 2017

Rate-limiting steps in yeast protein translation

scientific article published on June 2013

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

scientific article

Strand-specific, high-resolution mapping of modified RNA polymerase II.

scientific article published on 10 June 2016

Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity

scientific article published on 26 September 2024

Synonymous but not the same: the causes and consequences of codon bias

scientific article

The Destabilization of Lipid Membranes Induced by the C-terminal Fragment of Caspase 8-cleaved Bid Is Inhibited by the N-terminal Fragment

scientific article published on 01 July 2000

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans

scientific article published on 31 March 2016

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.

scientific article

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

scientific article

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

scholarly article by Wiebke Wlotzka published in July 2011

Transcriptome-wide analysis of exosome targets

scientific article published on 20 September 2012

List of works by Grzegorz Kudła

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

COMRADES determines in vivo RNA structures and interactions

Coding-sequence determinants of gene expression in Escherichia coli

Codon optimization of antigen coding sequences improves the immune potential of DNA vaccines against avian influenza virus H5N1 in mice and chickens

Codon usage influences fitness through RNA toxicity

Codon usage influences fitness through RNA toxicity

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

Evidence for strong mutation bias towards, and selection against, T/U content in SARS-CoV2: implications for attenuated vaccine design

Evidence for the biogenesis of more than 1,000 novel human microRNAs

Gene conversion and GC-content evolution in mammalian Hsp70.

Genome landscapes and bacteriophage codon usage

Global mapping of RNA homodimers in living cells

High guanine and cytosine content increases mRNA levels in mammalian cells

Hsp90 chaperones wild-type p53 tumor suppressor protein

Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II.

Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery

Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough

Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3' end of tRNA precursors

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target

Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate

N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3'-end processing

Network of epistatic interactions within a yeast snoRNA.

PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit

Rate-limiting steps in yeast protein translation

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.

Strand-specific, high-resolution mapping of modified RNA polymerase II.

Structural features within the NORAD long noncoding RNA underlie efficient repression of Pumilio activity

Synonymous but not the same: the causes and consequences of codon bias

The Destabilization of Lipid Membranes Induced by the C-terminal Fragment of Caspase 8-cleaved Bid Is Inhibited by the N-terminal Fragment

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans

The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis.

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

Transcriptome-wide analysis of exosome targets