Search filters

List of works by Paul Rainey

A conceptual framework for the evolutionary origins of multicellularity

scientific article published on 4 June 2013

A microfluidic anti-Factor Xa assay device for point of care monitoring of anticoagulation therapy

scientific article published on 13 May 2013

A novel microfluidic anti-factor Xa assay device for monitoring anticoagulant therapy at the point-of-care

scientific article published on 28 May 2013

A study of physical, chemical and biological properties of the mushroom casing layer. ⬇️

1985 master's thesis by Paul Barton Rainey at University of Canterbury

Adaptation of Pseudomonas fluorescens to the plant rhizosphere

scientific article (publication date: June 1999)

Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness

scientific article (publication date: May 2002)

Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype

scientific article published on 19 April 2006

Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity

scientific article published on 4 March 2007

Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation

scientific article

Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiation

scientific article

Adaptive evolution by spontaneous domain fusion and protein relocalization

scientific article published on 28 August 2017

Adaptive radiation in a heterogeneous environment

scientific article published in Nature

Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra

scientific article

Antagonistic coevolution between a bacterium and a bacteriophage

scientific article

Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants

scientific journal article

Automated reconstruction of whole-genome phylogenies from short-sequence reads

scientific article published on 05 March 2014

Bet hedging in the underworld ⬇️

scientific article published on October 27, 2010

Big questions, small worlds: microbial model systems in ecology

scientific article published in April 2004

Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose.

scientific article

Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens

scientific article (publication date: March 2015)

Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung ⬇️

scientific article published on October 6, 2011

Causes and Biophysical Consequences of Cellulose Production by Pseudomonas fluorescens SBW25 at the Air-Liquid Interface

scientific article published on 22 August 2019

CbrAB-dependent regulation of pcnB, a poly(A) polymerase gene involved in polyadenylation of RNA in Pseudomonas fluorescens.

scientific article published on 7 May 2010

Challenges in microbial ecology: building predictive understanding of community function and dynamics ⬇️

scientific article published on 29 March 2016

Cheats as first propagules: A new hypothesis for the evolution of individuality during the transition from single cells to multicellularity ⬇️

scientific article published on August 19, 2010

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

scientific article

Comparison of three molecular techniques for typing Pseudomonas aeruginosa isolates in sputum samples from patients with cystic fibrosis

scientific article

Comparison ofBorreliaisolated from UK foci of Lyme disease ⬇️

scientific article published on August 1, 1995

Competition both drives and impedes diversification in a model adaptive radiation

scientific article published on 7 September 2013

Construction and validation of a neutrally-marked strain of Pseudomonas fluorescens SBW25.

scientific article published on 10 July 2007

Correction to 'Competition both drives and impedes diversification in a model adaptive radiation'.

scientific article

Correction: Genomic Analysis of the Kiwifruit Pathogen pv. Provides Insight into the Origins of an Emergent Plant Disease

scientific article published on 10 September 2013

Curiosities of REPINs and RAYTs ⬇️

scientific article published on November 1, 2011

Cystic Fibrosis Therapy: A Community Ecology Perspective ⬇️

scientific article published on October 25, 2012

Darwin was right: where now for experimental evolution?

scientific article published on 20 October 2017

Demographic variation in community-based MRSA skin and soft tissue infection in Auckland, New Zealand

scientific article published on 15 April 2011

Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15.

scientific article published on November 2003

Development, life cycle, ultrastructure and phylogenetic position ofPasteuria ramosaMetchnikoff 1888: rediscovery of an obligate endoparasite ofDaphnia magnaStraus

article

Disturbance and diversity in experimental microcosms

scientific article published in Nature

Does variation of sex ratio enhance reproductive success of offspring in tawny owls ()

scientific article published in 1997

Dual involvement of CbrAB and NtrBC in the regulation of histidine utilization in Pseudomonas fluorescens SBW25

scientific article published on 01 January 2008

Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity

scientific article published on 07 July 2020

Eco-evolutionary feedback and the tuning of proto-developmental life cycles

scientific article

Ecological constraints on diversification in a model adaptive radiation

scientific article

Ecological scaffolding and the evolution of individuality

scientific article published on 10 February 2020

Environmentally constrained mutation and adaptive evolution in Salmonella

scientific article

Erratum: The role of parasites in sympatric and allopatric host diversification

scientific article published in Nature

Evolution of bacterial diversity and the origins of modularity.

scientific article

Evolution of cooperation and conflict in experimental bacterial populations.

scientific article published in September 2003

Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids

scientific article

Evolution of species interactions in a biofilm community

scientific article published in Nature

Evolution: How the unicorn got its horn.

scientific article published on 19 September 2012

Evolutionary biology: Arrhythmia of tempo and mode

scientific article published in October 2009

Evolutionary convergence in experimental Pseudomonas populations

scientific article

Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching ⬇️

scientific article published on April 13, 2011

Experimental Evolution of Cell Shape in Bacteria

Experimental adaptation to high and low quality environments under different scales of temporal variation.

scientific article published in January 2007

Experimental evolution of bet hedging

scientific article published in November 2009

Experimental evolution reveals hidden diversity in evolutionary pathways.

scientific article published on 25 March 2015

Experimental manipulation of selfish genetic elements links genes to microbial community function

scientific article published on 23 March 2020

Exploring the sociobiology of pyoverdin-producing Pseudomonas

scientific article published on 10 July 2013

Faculty of 1000 evaluation for Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

Founder niche constrains evolutionary adaptive radiation

scientific article

Fragmentation modes and the evolution of life cycles.

scientific article published on 22 November 2017

Functional and phylogenetic analysis of a plant-inducible oligoribonuclease (orn) gene from an indigenous Pseudomonas plasmid

scientific article published on September 2004

Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfaces

scientific article published in November 2003

Genetic analysis of the histidine utilization (hut) genes in Pseudomonas fluorescens SBW25.

scientific article published on August 2007

Genetic characterization of Pseudomonas fluorescens SBW25 rsp gene expression in the phytosphere and in vitro

scientific article published on December 2005

Genetic characterization of psp encoding the DING protein in Pseudomonas fluorescens SBW25

scientific article

Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand

scientific article published in 2018

Genome and Fatty Acid Analysis of Pseudomonas stutzeri

scientific article published in January 1994

Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.

scientific article published on March 2012

Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease

scientific article

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

scientific article published on 11 May 2009

Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25.

scientific article

Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet-associated Pseudomonas in Oxford and Auckland

scientific article published on 11 May 2020

Global analysis of predicted proteomes: functional adaptation of physical properties

scholarly article

IVET experiments in Pseudomonas fluorescens reveal cryptic promoters at loci associated with recognizable overlapping genes.

scientific article

Identification and Characterization of Domesticated Bacterial Transposases.

scientific article published on August 2017

Identification of a gene cluster encoding three high-molecular-weight proteins, which is required for synthesis of tolaasin by the mushroom pathogen Pseudomonas tolaasii

scientific article published in May 1993

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome

scientific article published in 2023

Immigration history controls diversification in experimental adaptive radiation

scientific article

In vivo expression technology strategies: valuable tools for biotechnology.

scientific article

Life cycles, fitness decoupling and the evolution of multicellularity

scientific article published in November 2014

Lineage Tracking for Probing Heritable Phenotypes at Single-Cell Resolution

scientific article (publication date: 2016)

Mechanisms linking diversity, productivity and invasibility in experimental bacterial communities ⬇️

scientific article published on 01 November 2002

Meta-population structure and the evolutionary transition to multicellularity

scientific article published on 09 July 2020

Microbes are not bound by sociobiology: response to Kümmerli and Ross-Gillespie (2013).

scientific article published on 29 September 2014

Microbiology. When being hyper keeps you fit.

scientific article

Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas

scientific article published in December 2014

Modes of migration and multilevel selection in evolutionary multiplayer games

scientific article published on 8 October 2015

Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol.

scientific article published on 21 July 2015

Mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in a complex environment

scholarly article

Nasal carriage of Staphylococcus aureus in healthy Aucklanders

scientific article published on 15 April 2011

Nascent multicellular life and the emergence of individuality

scientific article published in April 2014

Origin and Evolution of the Kiwifruit Canker Pandemic

scientific article

Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet

scientific article published on 01 September 1994

Physical and genetic map of the Pseudomonas fluorescens SBW25 chromosome

scientific article published in February 1996

Population mixing accelerates coevolution

scientific article published in 2003

Precarious development: the uncertain social life of cellular slime molds

scientific article

Predicting mutational routes to new adaptive phenotypes

Pseudomonas aeruginosa exhibits frequent recombination, but only a limited association between genotype and ecological setting.

scientific article

Regulation of copper homeostasis in Pseudomonas fluorescens SBW25

scientific article published on 14 August 2008

Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25

scientific article published in 2019

Resolving Conflicts During the Evolutionary Transition to Multicellular Life

scientific article published in 2014

Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase

article by Philippe Remigi et al published 5 March 2019 in Molecular Biology and Evolution

Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus.

scientific article

Role of the Transporter-Like Sensor Kinase CbrA in Histidine Uptake and Signal Transduction

scientific article

Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet

scientific article published on 05 July 2007

Single-step conjugative cloning of bacterial gene fusions involved in microbe-host interactions

scientific article published in September 1997

Site directed chromosomal marking of a fluorescent pseudomonad isolated from the phytosphere of sugar beet; stability and potential for marker gene transfer

scientific article published on 01 December 1995

Spatial distribution of microbial communities in the cystic fibrosis lung ⬇️

scientific article published on July 28, 2011

Spatial heterogeneity and the stability of host-parasite coexistence.

scientific article

Structure determination of tolaasin, an extracellular lipodepsipeptide produced by the mushroom pathogen, Pseudomonas tolaasii Paine

scientific article published on 19 March 2005

Studies of Adaptive Radiation Using Model Microbial Systems

scientific article published on 01 October 2000

The PIN-domain toxin-antitoxin array in mycobacteria

scientific article

The Pseudomonas fluorescens SBW25 wrinkly spreader biofilm requires attachment factor, cellulose fibre and LPS interactions to maintain strength and integrity

scientific article

The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion

scientific article published on 29 April 2014

The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens

scientific article published on 21 July 2010

The ecological genetics of Pseudomonas syringae from kiwifruit leaves.

scientific article published on 9 March 2018

The ecology and genetics of microbial diversity.

scientific article published in January 2004

The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa.

scientific article

The effect of population structure on the rate of evolution

scientific article published on 15 May 2013

The effect of spatial heterogeneity and parasites on the evolution of host diversity.

scientific article

The emergence and maintenance of diversity: insights from experimental bacterial populations

scientific article published on 01 June 2000

The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.

scientific article

The evolutionary emergence of stochastic phenotype switching in bacteria

scientific article published on 30 August 2011

The genetic structure of Staphylococcus aureus populations from the Southwest Pacific

scientific article

The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings

scientific article published in June 2006

The impact of phages on interspecific competition in experimental populations of bacteria

scientific article

The indigenous Pseudomonas plasmid pQBR103 encodes plant-inducible genes, including three putative helicases

scientific article published in December 2004

The involvement of Pseudomonas putida in basidiome initiation of the cultivated mushroom Agaricus bisporus. ⬇️

1989 doctoral thesis by Paul Barton Rainey at University of Canterbury

The origin and ecological significance of multiple branches for histidine utilization in Pseudomonas aeruginosa PAO1

scientific journal article

The role of a P1-type ATPase from Pseudomonas fluorescens SBW25 in copper homeostasis and plant colonization.

scientific article published in May 2007

The role of parasites in sympatric and allopatric host diversification

scientific article

The structure-function relationship of WspR, a Pseudomonas fluorescens response regulator with a GGDEF output domain.

scientific article

The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography

scientific article

Toward a dynamical understanding of microbial communities

scientific article published on 23 March 2020

Tuning a genetic switch: experimental evolution and natural variation of prophage induction

scientific article published on 05 November 2009

Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25.

scientific article published in September 2001

Unity from conflict

scientific article published in Nature

Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network.

scientific article published on 20 August 2006

Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression

scientific article

Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25.

scientific article published on 29 May 2017

Unusual mutational mechanisms and evolution

scientific article published in June 1993

Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts.

scientific article published on 5 December 2013

Using molecules to connect organisms, populations and communities

scientific article published in 2007

Variation in transport explains polymorphism of histidine and urocanate utilization in a natural Pseudomonas population ⬇️

scientific article published on January 9, 2012

Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria

scientific article

Paulina is supported by:

About Paulina

Help