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List of works by Mohd Shahir Shamsir

A protein short motif search tool using amino acid sequence and their secondary structure assignment.

scientific article published on 20 November 2011

An expanded mammal mitogenome dataset from Southeast Asia

scientific article

An improved differential evolution algorithm for enhancing biochemical pathways simulation and production.

scientific article published on January 2014

Beta-sheet containment by flanking prolines: molecular dynamic simulations of the inhibition of beta-sheet elongation by proline residues in human prion protein.

scientific article published on 15 December 2006

Bioinformatics in Malaysia: hope, initiative, effort, reality, and challenges

scientific article

CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures

scientific article published on 10 October 2012

Characterisation of a catalytic triad and reaction selectivity in the dual mechanism of the catalyse hydride transfer in xylitol phosphate dehydrogenase

scientific article published on 24 January 2020

Characterization of a glucose-tolerant β-glucosidase from Anoxybacillus sp. DT3-1.

scientific article published on 22 August 2016

Characterization of aluminum resistant Anoxybacillus sp. SK 3-4 isolated from a hot spring.

scientific article published on 19 December 2014

Characterization of the nearly complete mitochondrial genome of ochraceous darkies, <i>Euphaea ochracea</i> Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis

scientific article published in 2023

Characterizing a Halo-Tolerant GH10 Xylanase from Roseithermus sacchariphilus Strain RA and Its CBM-Truncated Variant ⬇️

scientific article published on 09 May 2019

Complete genome sequence of bacterium RA with cellulolytic and xylanolytic activities

scientific article published on 13 August 2018

Construction and Analysis of the Cell Surface's Protein Network for Human Sperm-Egg Interaction

scientific article

Counting in the dark: Non-intrusive laser scanning for population counting and identifying roosting bats ⬇️

scientific article published on July 23, 2012

Crystal structure of Anoxybacillus α-amylase provides insights into maltose binding of a new glycosyl hydrolase subclass

scientific article

Deciphering the catalytic amino acid residues of l-2-haloacid dehalogenase (DehL) from Rhizobium sp. RC1: An in silico analysis.

scientific article published on 14 August 2017

Deficiency in Sperm-Egg Protein Interaction as a Major Cause of Fertilization Failure.

scientific article published on 9 March 2017

Effects of Physiochemical Factors on Prokaryotic Biodiversity in Malaysian Circumneutral Hot Springs.

scientific article

Evaluation of potential molecular interaction between quorum sensing receptor, LuxP and grouper fatty acids: in-silico screening and simulation

scientific article published on 05 April 2019

Functional features and protein network of human sperm-egg interaction

scientific article published on 15 September 2014

Global transcriptomic response of Anoxybacillus sp. SK 3-4 to aluminum exposure.

scientific article published on 17 November 2016

Identification of putative drug targets for human sperm-egg interaction defect using protein network approach

scientific article

In silico deletion of PtsG gene in Escherichia coli genome-scale model predicts increased succinate production from glycerol.

scientific article published on 29 April 2015

Insights into the stereospecificity of the d-specific dehalogenase from Rhizobium sp. RC1 toward d- and l-2-chloropropionate.

scientific article published on July 2014

Interactions of non-natural halogenated substrates with D-specific dehalogenase (DehD) mutants using in silico studies.

scientific article

Model-aided atpE gene knockout strategy in Escherichia coli for enhanced succinic acid production from glycerol.

scientific article published on 29 October 2015

Model-assisted formate dehydrogenase-O (fdoH) gene knockout for enhanced succinate production in Escherichia coli from glucose and glycerol carbon sources

scientific article published on 29 October 2015

Model-guided metabolic gene knockout of gnd for enhanced succinate production in Escherichia coli from glucose and glycerol substrates.

scientific article published on 4 February 2016

Molecular Dynamics Simulations of the Temperature Induced Unfolding of Crambin Follow the Arrhenius Equation.

scientific article published on 20 August 2015

Multi-template homology-based structural model of L-2-haloacid dehalogenase (DehL) from Rhizobium sp. RC1.

scientific article published in November 2016

One gene, two diseases and three conformations: molecular dynamics simulations of mutants of human prion protein at room temperature and elevated temperatures

scientific article published in May 2005

Prediction of recombinant protein overexpression in Escherichia coli using a machine learning based model (RPOLP).

scientific article

Purification and characterization of a novel GH1 beta-glucosidase from Jeotgalibacillus malaysiensis

scientific article published on 01 May 2018

Review: DNA Barcoding and Chromatography Fingerprints for the Authentication of Botanicals in Herbal Medicinal Products

scientific article

Sequence and structural investigation of a novel psychrophilic α-amylase from Glaciozyma antarctica PI12 for cold-adaptation analysis

scientific article published on 18 May 2013

Spatial occurrence of dengue fever and its relationship with land use in Selangor, Malaysia.

scientific article published on 29 January 2014

Structural and functional analysis of a novel psychrophilic β-mannanase from Glaciozyma antarctica PI12.

scientific article published on 22 May 2014

Structural prediction of a novel chitinase from the psychrophilic Glaciozyma antarctica PI12 and an analysis of its structural properties and function

scientific article published on 19 June 2012

Structural prediction of a novel laminarinase from the psychrophilic Glaciozyma antarctica PI12 and its temperature adaptation analysis

scientific article published on 27 February 2015

Structural, functional and molecular dynamics analysis of the native and mutated actin to study its effect on congenital myopathy.

scientific article published on 22 July 2016

Structure prediction, molecular dynamics simulation and docking studies of D-specific dehalogenase from Rhizobium sp. RC1 ⬇️

scientific article published on 26 November 2012

Systematic Analysis of Protein Interaction Network Associated with Azoospermia.

scientific article

The role of alternative salt bridges in cold adaptation of a novel psychrophilic laminarinase.

scientific article published on 20 May 2016

Weighted voting-based consensus clustering for chemical structure databases.

scientific article published on 15 May 2014

birgHPC: creating instant computing clusters for bioinformatics and molecular dynamics

scientific article published on 12 March 2011

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