List of works - Roy D. Sleator

'Big data', Hadoop and cloud computing in genomics

scientific article

'Bioengineered Bugs' - a patho-biotechnology approach to probiotic research and applications

scientific article published on 23 April 2007

A Beginner’s Guide to Phylogenetics ⬇️

scientific article published on April 28, 2013

A PrfA-regulated bile exclusion system (BilE) is a novel virulence factor in Listeria monocytogenes.

scientific article

A Role for Translational Control in Listerial Osmoregulation and Strain Variation?

scientific article published on 01 January 2007

A genomic analysis of osmotolerance in Staphylococcus aureus

scientific article published on 03 November 2020

A novel role for the LisRK two-component regulatory system in listerial osmotolerance

scientific article published on 01 August 2005

A postgenomic appraisal of osmotolerance in Listeria monocytogenes

scientific article

A putative P-type ATPase required for virulence and resistance to haem toxicity in Listeria monocytogenes

scientific article

A rapid and sensitive system for recovery of nucleic acids from Mycobacteria sp. on archived glass slides

scientific article published on 26 November 2018

A role for proline synthesis and transport in Listeria monocytogenes barotolerance

scientific article published on 16 March 2011

A single point mutation in the listerial betL σ(A)-dependent promoter leads to improved osmo- and chill-tolerance and a morphological shift at elevated osmolarity

scientific article published on 11 March 2013

Accelerating in silico research with workflows: a lesson in Simplicity

scientific article

Acinetobacter baumannii: an emerging opportunistic pathogen

scientific article

Advances in the Microbiome: Applications to Clostridium difficile Infection

scientific article

An Alternative Viewpoint-Comment on Prescott and Bland Int. J. Environ. Res. Public Health 2020, 17, 1407

scientific article published on 11 July 2020

An Overview of Multiple Sequence Alignments and Cloud Computing in Bioinformatics

scholarly article by Jurate Daugelaite et al published 2013 in ISRN biomathematics

An Update on Global Tuberculosis (TB)

scientific article

An in silico analysis of osmotolerance in the emerging gastrointestinal pathogen Cronobacter sakazakii

scientific article published on September 2011

An overview of in silico protein function prediction.

scientific article

An overview of the current status of eukaryote gene prediction strategies

scientific article

An overview of the processes shaping protein evolution

scientific article published on January 2010

An overview of the processes shaping protein evolution

Analysis of the role of betL in contributing to the growth and survival of Listeria monocytogenes LO28

scientific article published on 01 September 2000

Analysis of the role of the Cronobacter sakazakii ProP homologues in osmotolerance

scientific article published on 24 May 2014

Animal-level factors associated with the achievement of desirable specifications in Irish beef carcasses graded using the EUROP classification system

scientific article published on 09 June 2020

Antibiotics v2.0: computational and synthetic biology approaches to combat antibiotic resistance.

scientific article published on 03 March 2017

Are subjectively scored linear type traits suitable predictors of the genetic merit for feed intake in grazing Holstein-Friesian dairy cows?

scientific article published in 2022

Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence.

scientific article

Bacterial stress response in Listeria monocytogenes: jumping the hurdles imposed by minimal processing

Battle of the bugs

scientific article published on 01 September 2008

Betaine and carnitine uptake systems in Listeria monocytogenes affect growth and survival in foods and during infection.

scientific article published in January 2003

Bio-Bites!.

scientific article published on 11 June 2013

Bioengineering of Bacteria

scholarly article published 2010

Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics

scientific article

COVID-19: in the absence of vaccination - 'mask-the-nation'

scientific article published on 17 July 2020

COVID-19: mask efficacy is dependent on both fabric and fit

scientific article published on 22 December 2020

Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).

scientific article

Campylobacter ureolyticus: a portrait of the pathogen

scientific article

Campylobacter ureolyticus: an emerging gastrointestinal pathogen?

scientific article

Carnitine enhances the growth of Listeria monocytogenes in infant formula at 7 degrees C.

scientific article published in June 2009

Changing Diagnostic Methods and Increased Detection of Verotoxigenic Escherichia coli, Ireland.

scientific article published on 15 September 2016

Changing profile of the bovine rotavirus G6 population in the south of Ireland from 2002 to 2009.

scientific article published on 31 May 2010

Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius

scientific article published on 18 April 2013

Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome

scientific article

Comparative modelling of LysB from the mycobacterial bacteriophage Ardmore

scientific article

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

scientific article published on 5 February 2016

Compatible solutes: A listerial passe-partout?

scientific article

Compatible solutes: the key to Listeria's success as a versatile gastrointestinal pathogen?

scientific article

Contribution of three bile-associated loci, bsh, pva, and btlB, to gastrointestinal persistence and bile tolerance of Listeria monocytogenes.

scientific article

Cronobacter sakazakii: stress survival and virulence potential in an opportunistic foodborne pathogen

scientific article

Cryptosporidium spp surveillance and epidemiology in Ireland: a longitudinal cohort study employing duplex real-time PCR based speciation of clinical cases

scientific article published on 14 May 2020

Designer probiotics: Development and applications in gastrointestinal health

scientific article (publication date: 15 August 2015)

Designer probiotics: a potential therapeutic for Clostridium difficile?

scientific article published on 01 June 2008

Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland

scientific article

Detection and genetic characterization of canine parvoviruses and coronaviruses in southern Ireland

scientific article published on 24 November 2010

Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.

scientific article published on 16 April 2014

Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice

scientific article

Development of a novel oral vaccine against Mycobacterium avium paratuberculosis and Johne disease: a patho-biotechnological approach

scientific article published on 23 October 2009

Digital biology: a new era has begun

scientific article published on November 2012

Digitizing humanity

scientific article published on April 2013

Directed panspermia: a 21st century perspective

scientific article published on 01 May 2017

Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus).

scientific article

Draft Genome Sequence of Campylobacter fetus subsp. CITCf01, Isolated from a Patient with Subacute Bacterial Endocarditis

scientific article published on 14 March 2019

Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.

scientific article published on 10 April 2014

Early life nutrition

Editorial: From Genes to Species: Novel Insights from Metagenomics

scientific article published on 3 August 2016

Emerging dynamics of human campylobacteriosis in Southern Ireland

scientific article published in November 2011

Empirical treatment of urinary tract infections: how rational are our guidelines?

scientific article published on 01 January 2019

Engineered Probiotics: Applications and Biological Containment.

scientific article published on 11 January 2017

Engineered pharmabiotics with improved therapeutic potential

scientific article published on July 2008

Enhanced expression of codon optimized Mycobacterium avium subsp. paratuberculosis antigens in Lactobacillus salivarius

scientific article published on 4 September 2014

Enhancing bile tolerance improves survival and persistence of Bifidobacterium and Lactococcus in the murine gastrointestinal tract

scientific article published on 09 October 2008

Epsilonproteobacteria in humans, New Zealand

scientific article published on October 2012

Feed and production efficiency of young crossbred beef cattle stratified on a terminal total merit index

scientific article published on 01 July 2020

Feed efficiency and carcass metrics in growing cattle1

scientific article published on 01 November 2019

Ferretting out the facts behind the H5N1 controversy ⬇️

scientific article published on May 1, 2012

Food reformulations for improved health: A potential risk for microbial food safety?

scientific article

Functional Screening of the Cronobacter sakazakii BAA-894 Genome reveals a role for ProP (ESA_02131) in carnitine uptake

scientific article published on 27 April 2015

Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome.

scientific article

Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome

scientific article

Gastrointestinal Disorders: A Patho‐biotechnology Approach to Probiotic Therapy

Genetics just got SEXY: Sequences encoding XY

scientific article published on 21 May 2014

Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus

scientific article

Genomics of Weissella cibaria with an examination of its metabolic traits.

scientific article published on 12 February 2015

Glycine betaine improves Listeria monocytogenes tolerance to desiccation on parsley leaves independent of the osmolyte transporters BetL, Gbu and OpuC.

scientific article published in November 2007

Greater high-pressure resistance of bacteria in oysters than in buffer

Gut osmolarity: A key environmental cue initiating the gastrointestinal phase of Listeria monocytogenes infection?

scientific article published on 11 April 2007

HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool

scientific article published on 24 January 2015

Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118

scientific article

High-pressure processing--effects on microbial food safety and food quality

scientific article published on 16 February 2008

Identification and characterization of an essential gene in Listeria monocytogenes using an inducible gene expression system.

scientific article

Improved detection of bacterial pathogens in patients presenting with gastroenteritis by use of the EntericBio real-time Gastro Panel I assay.

scientific article published on 12 June 2013

Improving gastric transit, gastrointestinal persistence and therapeutic efficacy of the probiotic strain Bifidobacterium breve UCC2003

scientific article published in 2007

In silico analysis of Ardmore, a novel mycobacteriophage isolated from soil

article

In silico modeling of the staphylococcal bacteriophage-derived peptidase CHAP(K).

scientific article published on July 2011

Increased diversity and novel subtypes among clinical Cryptosporidium parvum and Cryptosporidium hominis isolates in Southern Ireland

scientific article published on 25 August 2020

JCVI-syn3.0 - A synthetic genome stripped bare!

scientific article published on 25 April 2016

Landes Highlights

Large variability in feeding behavior among crossbred growing cattle

scientific article published on 13 July 2020

Letter from the Editor: Bioengineered Bugs begins ?.

scientific article published in January 2010

Lysins to kill - A tale of viral weapons of mass destruction ⬇️

scientific article published on 01 November 2011

Malnutrition in the elderly

scientific article published on 01 June 2019

Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

scientific article

Metagenomics

scientific article published on 01 November 2008

Metagenomics and novel gene discovery: promise and potential for novel therapeutics.

scientific article published on April 2013

Mining the human gut microbiome for novel stress resistance genes

scientific article published on 12 June 2012

Molecular analysis of the microbial food safety implications of food reformulations for improved health

scientific article

Molecular and physiological analysis of the role of osmolyte transporters BetL, Gbu, and OpuC in growth of Listeria monocytogenes at low temperatures

scientific article

Molecular diagnostics: the changing culture of medical microbiology

scientific article published in January 2012

Molecular-based detection of non-culturable and emerging campylobacteria in patients presenting with gastroenteritis

scientific article

Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland

scientific article published on 14 November 2012

Multiple deletions of the osmolyte transporters BetL, Gbu, and OpuC of Listeria monocytogenes affect virulence and growth at high osmolarity.

scientific article

Naturally selecting solutions: the use of genetic algorithms in bioinformatics

scientific article

Not so neglected diseases

scientific article published on 01 December 2007

Novel listerial genetic loci conferring enhanced barotolerance in Escherichia coli ⬇️

scientific article published on January 12, 2011

Patho-biotechnology: using bad bugs to do good things

scientific article

Patho-biotechnology; using bad bugs to make good bugs better

scientific article published on January 2007

Penicillin-binding proteins (PBP) and Lmo0441 (a PBP-like protein) play a role in Beta-lactam sensitivity of Listeria monocytogenes

scientific article

Phylogenetics.

scientific article published on 20 January 2011

Predicted carcass meat yield and primal cut yields in cattle divergent in genetic merit for a terminal index

scientific article published on 21 December 2018

Prediction of Protein Functions ⬇️

scientific article published on January 1, 2012

Probiotic therapy - recruiting old friends to fight new foes

scientific article

Probiotics -- a viable therapeutic alternative for enteric infections especially in the developing world

scientific article published on August 1, 2010

Probiotics and gastrointestinal disease: successes, problems and future prospects

scientific article

Proteins: form and function

scientific article published on March 2012

Rational design of improved pharmabiotics

scientific article

Re-assessing the importance of linear type traits in predicting genetic merit for survival in an aging Holstein-Friesian dairy cow population

scientific article published in 2022

Review of Bugging Cancer: A book by Ananda Chakrabarty and the Chicago Oncogroup

scientific article published on 9 June 2014

Role for HtrA in stress induction and virulence potential in Listeria monocytogenes.

scientific article

Role for compatible solutes glycine betaine and L-carnitine in listerial barotolerance

scientific article published on December 2004

Shedding light on betL: pPL2-lux mediated real-time analysis of betL expression in Listeria monocytogenes.

scientific article published on April 2016

So long, farewell, Auf Wiedersehen, Adieu….

scientific article published on 13 November 2017

Specific osmolyte transporters mediate bile tolerance in Listeria monocytogenes

scientific article published on 08 September 2009

Stool consistency: no hard and fast rules for the diagnosis of VTEC infection

scientific article published on 4 May 2016

Synthetic DNA: the next generation of big data storage

scientific article (publication date: 2013)

Synthetic biology: from mainstream to counterculture

scientific article published on 17 June 2016

Synthetic ribosomes: making molecules that make molecules

scientific article published on 16 January 2013

TRAPPIST-1: The dawning of the age of Aquarius.

scientific article

Terraforming: synthetic biology's final frontier

scientific article published on 30 March 2019

The achievement of a given carcass specification is under moderate genetic control in cattle

scientific article published on 27 May 2020

The democratization of bioinformatics: A software engineering perspective

scientific article published on 01 June 2020

The evolution of eLearning Background, blends and blackboard …

The evolution of eLearning background, blends and blackboard....

scientific article published on January 2010

The genetic code. Rewritten, revised, repurposed

scientific article published on May 2014

The human gut microbiome: the ghost in the machine

scientific article published in November 2012

The human superorganism – Of microbes and men

scientific article published on 01 February 2010

The interaction between Listeria monocytogenes and the host gastrointestinal tract.

scientific article published on 18 June 2009

The role of the Cronobacter sakazakii ProP C-terminal coiled coil domain in osmotolerance

scientific article published on 16 December 2014

The story of Mycoplasma mycoides JCVI-syn1.0: the forty million dollar microbe

scientific article published on July 2010

The synthetic biology future

scientific article (publication date: 2014)

Time it was, and what a time it was.. ⬇️

scientific article published on 01 January 2011

Transcriptional regulation and posttranslational activity of the betaine transporter BetL in Listeria monocytogenes are controlled by environmental salinity.

scientific article

Trials and Tribulations of Enteric Parasitology in the Molecular Era

scientific article published on 21 December 2017

Under the microscope: From pathogens to probiotics and back

scientific article published on 4 September 2015

Validation of the EntericBio Panel II® multiplex polymerase chain reaction system for detection of Campylobacter spp., Salmonella spp., Shigella spp., and verotoxigenic E. coli for use in a clinical diagnostic setting

scientific article published on 20 November 2012

What’s in a name...? ⬇️

scientific article published on June 29, 2012

Why appendectomies may lead to an increased risk of functional gastrointestinal disorders

scientific article published on 08 August 2008

List of works by Roy D. Sleator

'Big data', Hadoop and cloud computing in genomics

'Bioengineered Bugs' - a patho-biotechnology approach to probiotic research and applications

A Beginner’s Guide to Phylogenetics ⬇️

A PrfA-regulated bile exclusion system (BilE) is a novel virulence factor in Listeria monocytogenes.

A Role for Translational Control in Listerial Osmoregulation and Strain Variation?

A genomic analysis of osmotolerance in Staphylococcus aureus

A novel role for the LisRK two-component regulatory system in listerial osmotolerance

A postgenomic appraisal of osmotolerance in Listeria monocytogenes

A putative P-type ATPase required for virulence and resistance to haem toxicity in Listeria monocytogenes

A rapid and sensitive system for recovery of nucleic acids from Mycobacteria sp. on archived glass slides

A role for proline synthesis and transport in Listeria monocytogenes barotolerance

A single point mutation in the listerial betL σ(A)-dependent promoter leads to improved osmo- and chill-tolerance and a morphological shift at elevated osmolarity

Accelerating in silico research with workflows: a lesson in Simplicity

Acinetobacter baumannii: an emerging opportunistic pathogen

Advances in the Microbiome: Applications to Clostridium difficile Infection

An Alternative Viewpoint-Comment on Prescott and Bland Int. J. Environ. Res. Public Health 2020, 17, 1407

An Overview of Multiple Sequence Alignments and Cloud Computing in Bioinformatics

An Update on Global Tuberculosis (TB)

An in silico analysis of osmotolerance in the emerging gastrointestinal pathogen Cronobacter sakazakii

An overview of in silico protein function prediction.

An overview of the current status of eukaryote gene prediction strategies

An overview of the processes shaping protein evolution

An overview of the processes shaping protein evolution

Analysis of the role of betL in contributing to the growth and survival of Listeria monocytogenes LO28

Analysis of the role of the Cronobacter sakazakii ProP homologues in osmotolerance

Animal-level factors associated with the achievement of desirable specifications in Irish beef carcasses graded using the EUROP classification system

Antibiotics v2.0: computational and synthetic biology approaches to combat antibiotic resistance.

Are subjectively scored linear type traits suitable predictors of the genetic merit for feed intake in grazing Holstein-Friesian dairy cows?

Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence.

Bacterial stress response in Listeria monocytogenes: jumping the hurdles imposed by minimal processing

Battle of the bugs

Betaine and carnitine uptake systems in Listeria monocytogenes affect growth and survival in foods and during infection.

Bio-Bites!.

Bioengineering of Bacteria

Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics

COVID-19: in the absence of vaccination - 'mask-the-nation'

COVID-19: mask efficacy is dependent on both fabric and fit

Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).

Campylobacter ureolyticus: a portrait of the pathogen

Campylobacter ureolyticus: an emerging gastrointestinal pathogen?

Carnitine enhances the growth of Listeria monocytogenes in infant formula at 7 degrees C.

Changing Diagnostic Methods and Increased Detection of Verotoxigenic Escherichia coli, Ireland.

Changing profile of the bovine rotavirus G6 population in the south of Ireland from 2002 to 2009.

Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius

Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome

Comparative modelling of LysB from the mycobacterial bacteriophage Ardmore

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Compatible solutes: A listerial passe-partout?

Compatible solutes: the key to Listeria's success as a versatile gastrointestinal pathogen?

Contribution of three bile-associated loci, bsh, pva, and btlB, to gastrointestinal persistence and bile tolerance of Listeria monocytogenes.

Cronobacter sakazakii: stress survival and virulence potential in an opportunistic foodborne pathogen

Cryptosporidium spp surveillance and epidemiology in Ireland: a longitudinal cohort study employing duplex real-time PCR based speciation of clinical cases

Designer probiotics: Development and applications in gastrointestinal health

Designer probiotics: a potential therapeutic for Clostridium difficile?

Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland

Detection and genetic characterization of canine parvoviruses and coronaviruses in southern Ireland

Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.

Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice

Development of a novel oral vaccine against Mycobacterium avium paratuberculosis and Johne disease: a patho-biotechnological approach

Digital biology: a new era has begun

Digitizing humanity

Directed panspermia: a 21st century perspective

Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus).

Draft Genome Sequence of Campylobacter fetus subsp. CITCf01, Isolated from a Patient with Subacute Bacterial Endocarditis

Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.

Early life nutrition

Editorial: From Genes to Species: Novel Insights from Metagenomics

Emerging dynamics of human campylobacteriosis in Southern Ireland

Empirical treatment of urinary tract infections: how rational are our guidelines?

Engineered Probiotics: Applications and Biological Containment.

Engineered pharmabiotics with improved therapeutic potential

Enhanced expression of codon optimized Mycobacterium avium subsp. paratuberculosis antigens in Lactobacillus salivarius

Enhancing bile tolerance improves survival and persistence of Bifidobacterium and Lactococcus in the murine gastrointestinal tract

Epsilonproteobacteria in humans, New Zealand

Feed and production efficiency of young crossbred beef cattle stratified on a terminal total merit index

Feed efficiency and carcass metrics in growing cattle1

Ferretting out the facts behind the H5N1 controversy ⬇️

Food reformulations for improved health: A potential risk for microbial food safety?

Functional Screening of the Cronobacter sakazakii BAA-894 Genome reveals a role for ProP (ESA_02131) in carnitine uptake

Shedding light on betL: pPL2-lux mediated real-time analysis of betL expression in Listeria monocytogenes.