List of works by Antoine M van Oijen

3-Dimensional super-resolution by spectrally selective imaging

A Tool for Alignment and Averaging of Sparse Fluorescence Signals in Rod-Shaped Bacteria

scientific article published on April 2016

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

scientific article

A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode

scientific article published on 22 February 2013

A general approach to break the concentration barrier in single-molecule imaging

scientific article

A mechanism for the extension and unfolding of parallel G-quadruplexes by human telomerase at single-molecule resolution

scientific article published on 29 July 2020

A single-molecule characterization of p53 search on DNA

scientific article

A single-molecule view of DNA replication: the dynamic nature of multi-protein complexes revealed

scientific article published on 24 July 2013

A versatile approach to the generation of fluid supported lipid bilayers and its applications

scientific article published on 28 May 2014

Analysis of kinetic intermediates in single-particle dwell-time distributions

scientific article published on July 2010

Anisotropic functionalization of upconversion nanoparticles.

scientific article published on 23 April 2018

Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies

scientific article published on 03 April 2013

Biochemistry. Nudging through a nucleosome.

scientific article

Bisecting Microfluidic Channels with Metallic Nanowires Fabricated by Nanoskiving.

scientific article published on 5 February 2016

Bypass of a protein barrier by a replicative DNA helicase.

scientific article published on 28 November 2012

CHD4 slides nucleosomes by decoupling entry- and exit-side DNA translocation

scientific article published on 23 March 2020

CLASP promotes microtubule rescue by recruiting tubulin dimers to the microtubule

scientific article

Chikungunya virus fusion properties elucidated by single-particle and bulk approaches

scientific article published on 13 April 2015

Continuous-wave two-photon excitation of individual CdS nanocrystallites

scientific article published on 6 August 2001

Coupling dTTP hydrolysis with DNA unwinding by the DNA helicase of bacteriophage T7.

scientific article

Cutting the forest to see a single tree?

scientific article published on 01 August 2008

DNA is a co-factor for its own replication in Xenopus egg extracts

scientific article

DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli

scientific article

DNA primase acts as a molecular brake in DNA replication

scientific article

DNA replication at the single-molecule level

scientific article

Dancing on DNA: kinetic aspects of search processes on DNA

scientific article

Design of DNA rolling-circle templates with controlled fork topology to study mechanisms of DNA replication

scientific article published on 18 July 2018

Design of customizable long linear DNA substrates with controlled end modifications for single-molecule studies

scientific article published on 20 December 2019

Detection of kinetic change points in piece-wise linear single molecule motion.

scientific article published in March 2018

Diatrack particle tracking software: review of applications and performance evaluation

scientific article published on 25 September 2017

Direct observation of enzymes replicating DNA using a single-molecule DNA stretching assay

scientific article

Droplet microfluidics for kinetic studies of viral fusion

scientific article

Droplet microfluidics: A tool for biology, chemistry and nanotechnology

article

Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement.

scientific article

Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis

scientific article

E. coli DNA replication in the absence of free β clamps

scientific article

Endocytosis by random initiation and stabilization of clathrin-coated pits

scientific article published on September 2004

Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited

scientific article

External control of reactions in microdroplets

scientific article

Frequent template switching in postreplication gaps: suppression of deleterious consequences by the Escherichia coli Uup and RadD proteins

scientific article published on 01 January 2020

Hemagglutinin-Mediated Membrane Fusion: A Biophysical Perspective

scientific article published in March 2018

Honey, I shrunk the DNA: DNA length as a probe for nucleic-acid enzyme activity.

scientific article published on February 2007

Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion

scientific article

How DNA-repair proteins find their targets

scientific article

Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells

scientific article published on 19 July 2019

Identifying multiple kinetic populations of DNA binding proteins in live cells using single-molecule fluorescence imaging: Supplementary Information

scholarly article published 2 January 2019

Influenza-virus membrane fusion by cooperative fold-back of stochastically induced hemagglutinin intermediates.

scientific article published on 19 February 2013

Kinetics of proton transport into influenza virions by the viral M2 channel

scientific article

Lipids Activate SecA for High Affinity Binding to the SecYEG Complex.

scientific article published on 9 September 2016

Mechanism of membrane fusion induced by vesicular stomatitis virus G protein.

scientific article

Mechanisms of hemagglutinin targeted influenza virus neutralization

scientific article

Mechanisms of influenza viral membrane fusion

scientific article

Membrane-on-a-chip: microstructured silicon/silicon-dioxide chips for high-throughput screening of membrane transport and viral membrane fusion

scientific article published on 11 March 2014

Method for measurement of viral fusion kinetics at the single particle level

scientific article published on 7 September 2009

Multi-year antimicrobial-resistance trends in urine Escherichia coli isolates from both community-based and hospital-based laboratories of an Australian local health district

scientific article published in 2022

Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword

scientific article published on 4 April 2016

Nanoparticles for super-resolution microscopy and single-molecule tracking

scientific article published on 28 May 2018

Nuclease dead Cas9 is a programmable roadblock for DNA replication

scientific article published on 16 September 2019

On the Spatial Organization of mRNA, Plasmids, and Ribosomes in a Bacterial Host Overexpressing Membrane Proteins

scientific article

ParB spreading requires DNA bridging.

scientific article

Plasticity of Multi-Protein Complexes

scientific article published on 10 August 2018

Probing molecular choreography through single-molecule biochemistry

scientific article published in December 2015

Proliferating cell nuclear antigen uses two distinct modes to move along DNA.

scientific article published on 03 May 2009

Pyrovanadolysis, a pyrophosphorolysis-like reaction mediated by pyrovanadate, Mn2+, and DNA polymerase of bacteriophage T7

scientific article

Quantification of ligand density and stoichiometry on the surface of liposomes using single-molecule fluorescence imaging.

scientific article published on 22 March 2018

Real-time single-molecule observation of rolling-circle DNA replication

scientific article

RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli

scientific article published on 01 April 2019

Recycling of single-stranded DNA-binding protein by the bacterial replisome

scientific article published on 01 May 2019

Regulation of Mutagenic DNA Polymerase V Activation in Space and Time

scientific article

Relating influenza virus membrane fusion kinetics to stoichiometry of neutralizing antibodies at the single-particle level

scientific article

Replication-fork dynamics.

scientific article published on January 2014

Replisome bypass of a protein-based R-loop block by Pif1

scientific article published on 16 November 2020

Residues in the central beta-hairpin of the DNA helicase of bacteriophage T7 are important in DNA unwinding

scientific article

Resolving the Gordian Knot: Srs2 Strips Intermediates Formed during Homologous Recombination.

scientific article published on 28 December 2017

Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391

scientific article published on 10 August 2019

Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase.

scientific article published on September 2011

Sequence-dependent sliding kinetics of p53

scientific article

Shining a Spotlight on DNA: Single-Molecule Methods to Visualise DNA

scientific article published on 30 January 2019

Simultaneous Real-Time Imaging of Leading and Lagging Strand Synthesis Reveals the Coordination Dynamics of Single Replisomes.

scientific article published on 15 November 2016

Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange

scientific article

Single-Molecule Fluorescence Studies of Membrane Transporters Using Total Internal Reflection Microscopy

scientific article published on 18 July 2017

Single-Molecule Specific Mislocalization of Red Fluorescent Proteins in Live Escherichia coli.

scientific article published on 20 June 2016

Single-molecule analysis of DNA replication in Xenopus egg extracts

scientific article

Single-molecule approaches to characterizing kinetics of biomolecular interactions ⬇️

scientific article published on October 29, 2010

Single-molecule binding experiments on long time scales

scientific article

Single-molecule imaging at high fluorophore concentrations by local activation of dye.

scientific article

Single-molecule imaging of an in vitro-evolved RNA aptamer reveals homogeneous ligand binding kinetics

scientific article

Single-molecule imaging reveals molecular coupling between transcription and DNA repair in live cells: Supplementary Information

Single-molecule imaging reveals molecular coupling between transcription and DNA repair machinery in live cells

scientific article published on 20 March 2020

Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder

scientific article

Single-molecule live-cell imaging of bacterial DNA repair and damage tolerance

scientific article published in December 2017

Single-molecule live-cell imaging of clathrin-based endocytosis.

scientific article

Single-molecule live-cell imaging reveals parallel pathways of prokaryotic nucleotide excision repair: Supplementary Information

scholarly article published 8 January 2019

Single-molecule live-cell imaging visualizes parallel pathways of prokaryotic nucleotide excision repair

scientific article published on 20 March 2020

Single-molecule observation of prokaryotic DNA replication

scientific article

Single-molecule observation of prokaryotic DNA replication

scientific article published on 01 January 2015

Single-molecule studies of complex systems: the replisome

scientific article published on 22 December 2006

Single-molecule studies of fork dynamics in Escherichia coli DNA replication

scientific article published on 27 January 2008

Single-molecule studies of fork dynamics in Escherichia coli DNA replication

scientific article published on 01 September 2008

Single-molecule studies of polymerase dynamics and stoichiometry at the bacteriophage T7 replication machinery

scientific article

Single-molecule studies of the replisome

scientific article published on January 2010

Single-molecule visualization of Saccharomyces cerevisiae leading-strand synthesis reveals dynamic interaction between MTC and the replisome

scientific article published on 18 September 2017

Single-molecule visualization of conformational changes and substrate transport in the vitamin B12 ABC importer BtuCD-F.

scientific article published on 21 November 2017

Single-molecule visualization of fast polymerase turnover in the bacterial replisome

scientific article published on 22 April 2017

Single-particle fusion of influenza viruses reveals complex interactions with target membranes.

scientific article published on 6 April 2018

Single-particle kinetics of influenza virus membrane fusion

scientific article

Spatial and temporal organization of RecA in the DNA-damage response

scientific article published on 05 February 2019

Special Issue on Cell Biophysics

scientific article published on 27 June 2018

Specialised DNA polymerases in Escherichia coli: roles within multiple pathways

scientific article published on 26 April 2018

Spectroscopy of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila: diagonal disorder, intercomplex heterogeneity, spectral diffusion, and energy transfer in the B800 band

scientific article published on March 2000

Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila. I. Experiments and Monte Carlo simulations.

scientific article published on March 2001

Spectroscopy on the B850 band of individual light-harvesting 2 complexes of Rhodopseudomonas acidophila. II. Exciton states of an elliptically deformed ring aggregate.

scientific article published on March 2001

Speeding up biomolecular interactions by molecular sledding

scientific article published on 7 October 2015

Spotting the mistakes, one molecule at a time

scientific article published on 01 July 2012

Stability versus exchange: a paradox in DNA replication

scientific article

Steric exclusion and protein conformation determine the localization of plasma membrane transporters.

scientific article

The drivers of antibiotic use and misuse: the development and investigation of a theory driven community measure

scientific article published on 30 October 2019

The more the merrier: high-throughput single-molecule techniques.

scientific article published on June 2017

The small heat shock protein Hsp27 binds α-synuclein fibrils, preventing elongation and cytotoxicity

scientific article

The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage.

scientific article published on 20 April 2018

Theory of bimolecular reactions in a solution with linear traps: Application to the problem of target search on DNA.

scientific article published on 3 November 2015

Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.

scientific article

Timing, coordination, and rhythm: acrobatics at the DNA replication fork.

scientific article

Tumor suppressor p53 slides on DNA with low friction and high stability

scientific article published on 18 April 2008

Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication

scientific article published on 05 November 2019

Uncoupling of sister replisomes during eukaryotic DNA replication

scientific article

Unraveling the Electronic Structure of Individual Photosynthetic Pigment-Protein Complexes

scientific article

Unsynchronised subunit motion in single trimeric sodium-coupled aspartate transporters

scientific article published in October 2013

Using Single-Molecule Approaches to Understand the Molecular Mechanisms of Heat-Shock Protein Chaperone Function

scientific article published on 19 May 2018

Visualization of membrane fusion, one particle at a time.

scientific article published on 19 February 2013

Visualizing DNA replication at the single-molecule level

scientific article published on 01 January 2010

Visualizing Single-molecule DNA Replication with Fluorescence Microscopy

scientific article

Watching cellular machinery in action, one molecule at a time.

scientific article published on 15 December 2016

When proteins play tag: the dynamic nature of the replisome

scientific article published on 04 July 2019

iSBatch: a batch-processing platform for data analysis and exploration of live-cell single-molecule microscopy images and other hierarchical datasets.

scientific article published on 22 July 2015

mKikGR, a monomeric photoswitchable fluorescent protein

scientific article

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