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List of works by Aryeh Warmflash

A method to recapitulate early embryonic spatial patterning in human embryonic stem cells

scientific article

A model for TCR gene segment use

scientific article published on 01 September 2006

A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm

scientific article published on 17 October 2019

An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling.

scientific article

Coco is a dual activity modulator of TGFβ signaling

scientific article published on 26 June 2015

Comment on "Controlling long-term signaling: receptor dynamics determine attenuation and refractory behavior of the TGF-β pathway"-Smad2/3 activity does not predict the dynamics of transcription.

scientific article published on 23 September 2014

Control of genotypic allelic inclusion through TCR surface expression.

scientific article published in November 2005

Critical behavior of a model for catalyzed autoamplification

scientific article published on 01 April 2009

Defining cooperativity in gene regulation locally through intrinsic noise.

scientific article

Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids

scientific article published on 15 October 2019

Dynamics of TGF-β signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4 ⬇️

scientific article published on June 11, 2012

Encoding of temporal signals by the TGF-β pathway and implications for embryonic patterning

scientific article

Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses

scientific article

Field theoretic treatment of an effective action for a model of catalyzed autoamplification

scientific article published on 08 January 2010

How noise statistics impact models of enzyme cycles

scientific article published in June 2008

Human neural tube morphogenesis in vitro by geometric constraints

scientific article published on 27 October 2021

Modeling Mammalian Gastrulation With Embryonic Stem Cells

scientific article published on 12 April 2018

Morphogen and community effects determine cell fates in response to BMP4 signaling in human embryonic stem cells

scientific article published on 31 July 2017

Multilineage transcriptional priming and determination of alternate hematopoietic cell fates

scientific article published in August 2006

Nonequilibrium umbrella sampling in spaces of many order parameters

scientific article published in February 2009

Pareto evolution of gene networks: an algorithm to optimize multiple fitness objectives

scientific article (publication date: October 2012)

Pluripotent stem cells as a model for embryonic patterning: From signaling dynamics to spatial organization in a dish

scientific article published on 12 July 2016

Rapid changes in morphogen concentration control self-organized patterning in human embryonic stem cells

scientific article published on 04 March 2019

Rapid fabrication of hydrogel micropatterns by projection stereolithography for studying self-organized developmental patterning

scientific article published on 02 June 2021

S-MiRAGE: A Quantitative, Secreted RNA-Based Reporter of Gene Expression and Cell Persistence

scientific article published on 21 December 2018

SMAD7 directly converts human embryonic stem cells to telencephalic fate by a default mechanism.

scientific article

Self-organization of human embryonic stem cells on micropatterns

scientific article published on 13 October 2016

Separating forward and backward pathways in nonequilibrium umbrella sampling.

scientific article published in October 2009

Signaling dynamics and embryonic development

scientific article published on 30 August 2012

Signatures of combinatorial regulation in intrinsic biological noise.

scholarly article

Stem-cell-based embryo models for fundamental research and translation

scientific article published on 16 November 2020

Synergy with TGFβ ligands switches WNT pathway dynamics from transient to sustained during human pluripotent cell differentiation

scientific article published on 28 February 2019

Synthetic Embryos: Windows into Mammalian Development.

scientific article published in May 2017

The molecular circuitry underlying pluripotency in embryonic stem cells

scientific article published on 03 July 2012

Umbrella sampling for nonequilibrium processes

scientific article published in October 2007

cytoNet: Spatiotemporal network analysis of cell communities

scientific article published on 13 June 2022

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