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List of works by Alun Thomas

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

scientific article

A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening

scientific article published on 20 August 2007

A candidate prostate cancer susceptibility gene at chromosome 17p

scientific article (publication date: February 2001)

A chromosome 16 quantitative trait locus regulates allogeneic bone marrow engraftment in nonmyeloablated mice.

scientific article published on 05 May 2009

A linear time algorithm for calculation of multiple pairwise kinship coefficients and the genetic index of familiality

scientific article published in October 1994

A method and program for estimating graphical models for linkage disequilibrium that scale linearly with the number of loci, and their application to gene drop simulation

scientific article published on 16 March 2009

A multivariate time series approach to modeling and forecasting demand in the emergency department.

scientific article published on 17 May 2008

A parallel genetic algorithm to discover patterns in genetic markers that indicate predisposition to multifactorial disease

scientific article published on 10 June 2008

A primary genetic linkage map for human chromosome 12.

scientific article published in September 1987

A unique genome-wide association analysis in extended Utah high-risk pedigrees identifies a novel melanoma risk variant on chromosome arm 10q.

scientific article published on 26 June 2011

Accelerated gene counting for haplotype frequency estimation

scientific article published in November 2003

Accuracy and computational efficiency of a graphical modeling approach to linkage disequilibrium estimation.

scientific article published on 6 January 2011

An analysis of unclassified missense substitutions in human BRCA1

scientific article published on 01 January 2006

An application of the latent p value method to assess linkage in asthma pedigrees.

scientific article

Assessment of SNP streak statistics using gene drop simulation with linkage disequilibrium.

scientific article

Automated construction and testing of multi-locus gene–gene associations ⬇️

scientific article published on November 13, 2010

Calibration of multiple in silico tools for predicting pathogenicity of mismatch repair gene missense substitutions

scientific article

Characterization of linkage disequilibrium structure, mutation history, and tagging SNPs, and their use in association analyses:ELAC2 and familial early-onset prostate cancer

scientific article published on 01 April 2005

Characterizing allelic associations from unphased diploid data by graphical modeling.

scientific article

Classification of rare missense substitutions, using risk surfaces, with genetic- and molecular-epidemiology applications.

scientific article published on November 2008

Classifying, identifying and enumerating arbitrary relationships

scientific article published in May 1988

Creation of a national resource with linked genealogy and phenotypic data: the Veterans Genealogy Project

scientific article

Detecting Pleiotropy and Epistasis Using Variance Components Linkage Analysis in jPAP ⬇️

scientific article published on December 23, 2011

Effect of linkage disequilibrium on the identification of functional variants

scientific article published on January 2011

Efficient parameter estimation for models of healthcare-associated pathogen transmission in discrete and continuous time

scientific article published on 10 October 2013

Enumerating the decomposable neighbours of a decomposable graph under a simple perturbation scheme

scientific article published in February 2009

Enumerating the junction trees of a decomposable graph

scientific article published on December 2009

Estimating the parameters of a model for protein-protein interaction graphs

scientific article published on 20 July 2006

Evaluation of record linkage between a large healthcare provider and the Utah Population Database.

scientific article

Evidence for linkage on chromosome 3q25-27 in a large autism extended pedigree

scientific article published in January 2005

Extending the Fellegi-Sunter probabilistic record linkage method for approximate field comparators

scientific article published on 13 August 2009

Familial associations between cancer sites.

scientific article published in December 1999

Fine mapping of the Bmgr5 quantitative trait locus for allogeneic bone marrow engraftment in mice

scientific article published on 12 May 2013

GMCheck: Bayesian error checking for pedigree genotypes and phenotypes

scientific article published on 06 May 2005

Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.

scientific article published on 4 June 2016

Graphical modeling of the joint distribution of alleles at associated loci

scientific article

Haplotype association analyses in resources of mixed structure using Monte Carlo testing ⬇️

scientific article published on December 9, 2010

Identification and study of Utah pseudo-isolate populations—prospects for gene identification

article

Identification of a major susceptibility locus for lethal graft-versus-host disease in MHC-matched mice

scientific article published on 12 June 2009

Identification of regions of positive selection using Shared Genomic Segment analysis

scientific article

Identification of specific Y chromosomes associated with increased prostate cancer risk

scientific article

Identifying rare variants from exome scans: the GAW17 experience

scientific article

Improved hidden Markov model for nosocomial infections

scientific article published on 19 July 2013

Linkage analysis of extended high-risk pedigrees replicates a cutaneous malignant melanoma predisposition locus on chromosome 9q21.

scientific article published on 6 September 2012

Linkage of body mass index to chromosome 20 in Utah pedigrees.

scientific article

Maximum likelihood estimates of allele frequencies and error rates from samples of related individuals by gene counting

scientific article published on 12 January 2006

Novel pedigree analysis implicates DNA repair and chromatin remodeling in multiple myeloma risk.

scientific article published in February 2018

Pairwise shared genomic segment analysis in high-risk pedigrees: application to Genetic Analysis Workshop 17 exome-sequencing SNP data.

scientific article

Pairwise shared genomic segment analysis in three Utah high-risk breast cancer pedigrees

scientific article

Population-based risk assessment for other cancers in relatives of hereditary prostate cancer (HPC) cases

scientific article published in September 2005

Rare, evolutionarily unlikely missense substitutions in ATM confer increased risk of breast cancer

scientific article published on 24 September 2009

Rare, evolutionarily unlikely missense substitutions in CHEK2 contribute to breast cancer susceptibility: results from a breast cancer family registry case-control mutation-screening study

scientific article (publication date: 18 January 2011)

Replication of the 10q11 and Xp11 prostate cancer risk variants: results from a Utah pedigree-based study

scientific article published on 31 March 2009

Shared genomic segment analysis. Mapping disease predisposition genes in extended pedigrees using SNP genotype assays.

scientific article

Shared genomic segment analysis: the power to find rare disease variants

scientific article published on 19 September 2012

Software trapping: a strategy for finding genes in large genomic regions

scientific article published on 01 April 1995

Tests of association for rare variants: case control mutation screening

scientific article

The conditional independences between variables derived from two independent identically distributed Markov random fields when pairwise order is ignored

scientific article

The predictive value of BRCA1 and BRCA2 mutation testing

scientific article published on 01 January 2000

Towards linkage analysis with markers in linkage disequilibrium by graphical modelling.

scientific article published on 27 April 2007

Use of strain typing data to estimate bacterial transmission rates in healthcare settings.

scientific article

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