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List of works by José Crossa

A Bayesian Decision Theory Approach for Genomic Selection. ⬇️

scientific article published on 30 August 2018

A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data

scientific article published on 07 October 2019

A Bayesian Genomic Regression Model with Skew Normal Random Errors.

scientific article

A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding

article

A Genomic Selection Index Applied to Simulated and Real Data

scientific article

A data-driven simulation platform to predict cultivars' performances under uncertain weather conditions

scientific article published on 25 September 2020

A multi-trait multi-environment QTL mixed model with an application to drought and nitrogen stress trials in maize (Zea mays L.)

article

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

scientific article

A robust Bayesian genome-based median regression model

scientific article published on 12 February 2019

A shifted multiplicative model cluster analysis for grouping environments without genotypic rank change.

scientific article

A singular value decomposition Bayesian multiple-trait and multiple-environment genomic model

scientific article published on 17 August 2018

AMMI adjustment for statistical analysis of an international wheat yield trial

scientific article published in January 1991

An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Based Prediction

scientific article published on 07 May 2019

An assessment of wheat yield sensitivity and breeding gains in hot environments.

scientific article published on 5 December 2012

Analysis of Genetic Factors Influencing the Developmental Rate of Globally Important CIMMYT Wheat Cultivars

article

Application of multi-trait Bayesian decision theory for parental genomic selection

scientific article published in 2021

Assessment of genetic diversity in synthetic hexaploid wheats and their Triticum dicoccum and Aegilops tauschii parents using AFLPs and agronomic traits

article published in 2003

Association Mapping Reveals Novel Stem Rust Resistance Loci in Durum Wheat at the Seedling Stage

Association analysis of historical bread wheat germplasm using additive genetic covariance of relatives and population structure

scientific article

Association mapping for resistance to tan spot induced by Pyrenophora tritici-repentis race 1 in CIMMYTs historical bread wheat set

article published in 2015

Associations of Environments in South Asia Based on Spot Blotch Disease of Wheat Caused by

article

BGGE: A New Package for Genomic-Enabled Prediction Incorporating Genotype × Environment Interaction Models

scientific article published on 30 August 2018

Bayesian genomic-enabled prediction as an inverse problem

scientific article

Breeding schemes for the implementation of genomic selection in wheat (Triticum spp.)

scientific article

Bringing wild relatives back into the family: recovering genetic diversity in CIMMYT improved wheat germplasm

Building the Embrapa rice breeding dataset for efficient data reuse

scientific article published in 2021

Coleoptile length variation of near-isogenic Rht lines of modern CIMMYT bread and durum wheats

Combining ability and heterosis under pest epidemics in a broad-based global wheat-breeding population

Combining superior agronomic performance and terminal heat tolerance with resistance to spot blotch (Bipolaris sorokiniana) of wheat in the warm humid Gangetic Plains of South Asia

article

Comparing gradient boosting machine and Bayesian threshold BLUP for genome‐based prediction of categorical traits in wheat breeding

scientific article published in 2022

Comparison between linear and non-parametric regression models for genome-enabled prediction in wheat

scientific article published on December 2012

Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures

scientific article

Deep Kernel for Genomic and Near Infrared Predictions in Multi-environment Breeding Trials

scientific article published on 04 September 2019

Detecting (trans)gene flow to landraces in centers of crop origin: lessons from the case of maize in Mexico

scientific article published in October 2005

Development and characterization of the 4th CSISA-spot blotch nursery of bread wheat

article

Differential Adaptation of CIMMYT Bread Wheat to Global High Temperature Environments

Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints

scientific article published on 11 September 2020

Durum wheat (Triticum durum Desf.) Mediterranean landraces as sources of variability for allelic combinations at Glu-1/Glu-3 loci affecting gluten strength and pasta cooking quality

Earliness in wheat: A key to adaptation under terminal and continual high temperature stress in South Asia

article

Effect of Leaf Rust on Grain Yield and Yield Traits of Durum Wheats with Race-Specific and Slow-Rusting Resistance to Leaf Rust

scientific article published on 01 August 2006

Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments

scientific article

Efficiency of a Constrained Linear Genomic Selection Index To Predict the Net Genetic Merit in Plants

scientific article published on 03 December 2019

Enviromic-based kernels may optimize resource allocation with multi-trait multi-environment genomic prediction for tropical Maize

scientific article published in 2023

Evaluation and Interpretation of Interactions

article published in 2015

Evaluation of Grain Yield and Quality Traits of Bread Wheat Genotypes Cultivated in Northwest Turkey

article published in 2016

Evaluation of slow rusting resistance components to leaf rust in CIMMYT durum wheats

Expectation and variance of the estimator of the maximized selection response of linear selection indices with normal distribution

scientific article published on 20 June 2020

Gene action of canopy temperature in bread wheat under diverse environments

scientific article

Gene effects and heterosis for grain iron and zinc density in pearl millet (Pennisetum glaucum (L.) R. Br)

article

Genetic Analysis of Slow-Rusting Resistance to Leaf Rust in Durum Wheat

article

Genetic Diversity in CIMMYT Nontemperate Maize Germplasm: Landraces, Open Pollinated Varieties, and Inbred Lines

Genetic Gains for Grain Yield in CIMMYT Spring Bread Wheat across International Environments

article

Genetic Yield Gains and Changes in Associated Traits of CIMMYT Spring Bread Wheat in a “Historic” Set Representing 30 Years of Breeding

article

Genetic analysis of adult plant, quantitative resistance to stripe rust in wheat cultivar 'Stephens' in multi-environment trials

scientific article published on 13 September 2011

Genome-Wide Association Study for Adaptation to Agronomic Plant Density: A Component of High Yield Potential in Spring Wheat

article

Genome-based prediction of Bayesian linear and non-linear regression models for ordinal data

scientific article published on 14 May 2020

Genome-based prediction of multiple wheat quality traits in multiple years

scientific article published on 25 July 2020

Genome-enabled prediction of genetic values using radial basis function neural networks

scientific article

Genome-enabled prediction using probabilistic neural network classifiers

scientific article

Genomic Prediction of Gene Bank Wheat Landraces

scientific article

Genomic Prediction of Genetic Values for Resistance to Wheat Rusts

Genomic Prediction with Pedigree and Genotype × Environment Interaction in Spring Wheat Grown in South and West Asia, North Africa, and Mexico

scientific article

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

article

Genomic prediction in CIMMYT maize and wheat breeding programs

scientific article published on 10 April 2013

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

scientific article published on 19 November 2014

Genomic prediction in maize breeding populations with genotyping-by-sequencing

scientific article

Genomic-Enabled Prediction Kernel Models with Random Intercepts for Multi-environment Trials.

scientific article published on 23 February 2018

Genomic-Enabled Prediction of Ordinal Data with Bayesian Logistic Ordinal Regression

scientific article

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

scientific article published in Scientific Reports

Genomic-enabled prediction with classification algorithms.

scientific article

Genotype by environment effects and selection for drought tolerance in tropical maize. II. Three-mode pattern analysis

scholarly article

Genotype×environment interaction for zinc and iron concentration of wheat grain in eastern Gangetic plains of India

article by A.K. Joshi et al published April 2010 in Field Crops Research

Global Adaptation of Spring Bread and Durum Wheat Lines Near-Isogenic for Major Reduced Height Genes

article

Global adaptation patterns of Australian and CIMMYT spring bread wheat

scientific article published on September 2007

Grouping of accessions of Mexican races of maize revisited with SSR markers

scientific article published on 22 April 2006

Harnessing genetic potential of wheat germplasm banks through impact-oriented-prebreeding for future food and nutritional security

scientific article published in Scientific Reports

Heterosis among populations of maize (Zea mays L.) with different levels of exotic germplasm

scientific article published on 01 January 1987

Hierarchical Multiple-Factor Analysis for Classifying Genotypes Based on Phenotypic and Genetic Data

article

High yield potential, shuttle breeding, genetic diversity, and a new international wheat improvement strategy

article

High‐throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF ⬇️

scientific article published on May 1, 2012

Historical changes in grain yield and quality of spring wheat varieties cultivated in Siberia from 1900 to 2010

article

Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat

article

I.4 Screening Experimental Designs for Quantitative Trait Loci, Association Mapping, Genotype-by Environment Interaction, and Other Investigations ⬇️

scientific article published on January 1, 2012

Implications of the variance effective population size on the genetic conservation of monoecious species

scientific article published in December 1994

Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics

scientific article published on 23 September 2019

Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model

scientific article

Indirect selection using reference and probe genotype performance in multi-environment trials

article published in 2011

Interpreting genotype × environment interaction in tropical maize using linked molecular markers and environmental covariables ⬇️

scientific article published on August 1, 1999

Joint Use of Genome, Pedigree, and Their Interaction with Environment for Predicting the Performance of Wheat Lines in New Environments

scientific article published on 04 September 2019

Lessons learnt from forty years of international spring bread wheat trials

article

Long-term association of locations for testing spring bread wheat

article

Long-term consequences of tillage, residue management, and crop rotation on maize/wheat root rot and nematode populations in subtropical highlands

scientific article published in 2006

Mega-Environment Identification for Barley Based on Twenty-Seven Years of Global Grain Yield Data

Methodologies for estimating the sample size required for genetic conservation of outbreeding crops

scientific article published on February 1989

Modeling Additive × Environment and Additive × Additive × Environment Using Genetic Covariances of Relatives of Wheat Genotypes

Modeling Genotype × Environment Interaction Using Additive Genetic Covariances of Relatives for Predicting Breeding Values of Wheat Genotypes

article

Molecular mapping across three populations reveals a QTL hotspot region on chromosome 3 for secondary traits associated with drought tolerance in tropical maize.

scientific article

Multi-environment Genomic Prediction of Plant Traits Using Deep Learners with Dense Architecture

article

Multi-trait and multi-environment QTL analyses for resistance to wheat diseases

scientific article

Multi-trait genomic-enabled prediction enhances accuracy in multi-year wheat breeding trials

scientific article published in 2021

Multi-trait, Multi-environment Deep Learning Modeling for Genomic-Enabled Prediction of Plant Traits

article

New Deep Learning Genomic-Based Prediction Model for Multiple Traits with Binary, Ordinal, and Continuous Phenotypes

scientific article published on 07 May 2019

Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

scientific article published on 27 August 2020

On Hadamard and Kronecker products in covariance structures for genotype × environment interaction

scientific article published on 15 July 2020

Performance of Yield and Stability of Advanced Wheat Genotypes under Heat Stress Environments of the Indo-Gangetic Plains

Performance of biofortified spring wheat genotypes in target environments for grain zinc and iron concentrations

article

Phenotyping transgenic wheat for drought resistance

scientific article

Phylogenetic and multivariate analyses to determine the effects of different tillage and residue management practices on soil bacterial communities

scientific article

Physiological factors associated with genotype by environment interaction in wheat

Plant regeneration from immature embryos of 48 elite CIMMYT bread wheats

article

Practical considerations for maintaining germplasm in maize

scientific article published on September 1994

Predicted and realized grain yield responses to full-sib family selection in CIMMYT maize (Zea mays L.) populations

article

Prediction of Multiple-Trait and Multiple-Environment Genomic Data Using Recommender Systems.

scientific article

Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers.

scientific article

Prediction of genetic values of quantitative traits with epistatic effects in plant breeding populations

scientific article

QTL mapping in three tropical maize populations reveals a set of constitutive and adaptive genomic regions for drought tolerance

scientific article published on 4 November 2012

QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines

scientific article published on 01 October 2006

Race non-specific resistance to rust diseases in CIMMYT spring wheats

article

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population.

scientific article published on 22 May 2017

Regeneration potential of CIMMYT durum wheat and triticale varieties from immature embryos

Regularized selection indices for breeding value prediction using hyper-spectral image data

scientific article published on 18 May 2020

Relationships between physiological traits, grain number and yield potential in a wheat DH population of large spike phenotype

scholarly article by Oorbessy Gaju et al published August 2014 in Field Crops Research

Resistance to barley scald (Rhynchosporium secalis) in the Ethiopian donor lines 'Steudelli' and 'Jet', analyzed by partial least squares regression and interval mapping.

scientific article published in January 2004

Response to drought and heat stress on wheat quality, with special emphasis on bread-making quality, in durum wheat

scholarly article by Carlos Guzmán et al published February 2016 in Field Crops Research

Rindsel: An R Package for Phenotypic and Molecular Selection Indices Used in Plant Breeding

article

Sample size under inverse negative binomial group testing for accuracy in parameter estimation

scientific article

Searching for novel sources of field resistance to Ug99 and Ethiopian stem rust races in durum wheat via association mapping

scientific article published on 21 February 2013

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods

scientific article published in August 2010

Sources of the highly expressed wheat bread making (wbm) gene in CIMMYT spring wheat germplasm and its effect on processing and bread-making quality

article

Statistical genetic considerations for maintaining germ plasm collections

scientific article published on 01 July 1993

Technical note: An R package for fitting Bayesian regularized neural networks with applications in animal breeding

scientific article published on 8 May 2013

The area under the function: an index for selecting desirable genotypes

scientific article published on 01 December 1993

The effect of tillage, crop rotation and residue management on maize and wheat growth and development evaluated with an optical sensor

article

The global adaptation of bread wheat at high latitudes

The use of unbalanced historical data for genomic selection in an international wheat breeding program

article

Three-Mode Principal Component Analysis of Genotype-by-Environment-by-Trait Data in Durum Wheat

Threshold models for genome-enabled prediction of ordinal categorical traits in plant breeding

scientific article published on 23 December 2014

Use of Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat

article

Use of rapid tests to predict quality traits of CIMMYT bread wheat genotypes grown under different environments

Using the shifted multiplicative model to search for "separability" in crop cultivar trials.

scientific article

Variability in glutenin subunit composition of Mediterranean durum wheat germplasm and its relationship with gluten strength

scientific article published on 28 February 2013

Wheat genetic resources enhancement by the International Maize and Wheat Improvement Center (CIMMYT)

article

Wheat grain yield and stability assessed through regional trials in the Eastern Gangetic Plains of South Asia

article

Wheat yield and tillage–straw management system×year interaction explained by climatic co-variables for an irrigated bed planting system in northwestern Mexico

article

When less can be better: How can we make genomic selection more cost-effective and accurate in barley?

scientific article published on 01 June 2018

isqg: A Binary Framework for in Silico Quantitative Genetics

scientific article published on 08 August 2019

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