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List of works by Jörg Soppa

A 2-oxoacid dehydrogenase complex of Haloferax volcanii is essential for growth on isoleucine but not on other branched-chain amino acids

scientific article published on 12 November 2009

A 71-kDa protein from Halobacterium salinarium belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure

scientific article published on January 1998

A comprehensive analysis of the importance of translation initiation factors for Haloferax volcanii applying deletion and conditional depletion mutants

scientific article published on 14 November 2013

A novel mechanism for translation initiation operates in haloarchaea

scientific article published on 23 January 2009

Archaeal Protein Biogenesis: Posttranslational Modification and Degradation ⬇️

scientific article published on September 30, 2010

Bacteriorhodopsin mutants of Halobacterium sp. GRB. I. The 5-bromo-2'-deoxyuridine selection as a method to isolate point mutants in halobacteria

scientific article published on 01 August 1989

Bacteriorhodopsin mutants of Halobacterium sp. GRB. II. Characterization of mutants

scientific article published on 01 August 1989

Basal and regulated transcription in archaea

scientific article published on 01 January 2001

Bioinformatic and genetic characterization of three genes localized adjacent to the major replication origin of Haloferax volcanii

scientific article published on 01 November 2019

Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii

scientific article published on 29 June 2011

Biological functions, genetic and biochemical characterization, and NMR structure determination of the small zinc finger protein HVO_2753 from Haloferax volcanii

scientific article published on 09 September 2020

Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum

scientific article

Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein

scientific journal article

Characterization of Copy Number Control of Two Haloferax volcanii Replication Origins Using Deletion Mutants and Haloarchaeal Artificial Chromosomes

scientific article published on 16 October 2017

Characterization of a Haloferax volcanii member of the enolase superfamily: deletion mutant construction, expression analysis, and transcriptome comparison

scientific article

Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene

scientific article published on 31 October 2007

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq

scientific article published in 2019

Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.

scientific article

DNA as a phosphate storage polymer and the alternative advantages of polyploidy for growth or survival.

scientific article

Deletion of the Sm1 encoding motif in the lsm gene results in distinct changes in the transcriptome and enhanced swarming activity of Haloferax cells.

scientific article published on 6 March 2015

Differential stability of TATA box binding proteins from archaea with different optimal growth temperatures

scientific article published on 14 April 2009

Effects of Kasugamycin on the Translatome of Escherichia coli

scientific article

Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1

scientific article

Evolutionary advantages of polyploidy in halophilic archaea ⬇️

scientific article published on February 1, 2013

Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea

scientific article

Expression of beta 2-adrenoceptors in halobacteria

scientific article published in February 1997

Extensive proteolysis inhibits high-level production of eukaryal G protein-coupled receptors in the archaeon Haloferax volcanii

scientific article published in February 1999

From genomes to function: haloarchaea as model organisms

scientific article

From replication to cultivation: hot news from Haloarchaea.

scientific article

Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation, and biology of Haloferax volcanii.

scientific article

Functional role for a 2-oxo acid dehydrogenase in the halophilic archaeon Haloferax volcanii.

scientific article published on June 2002

Gene conversion results in the equalization of genome copies in the polyploid haloarchaeon Haloferax volcanii

scientific article published on 16 March 2011

Gene regulation and genome function in Archaea: a progress survey

scientific article published on 01 September 2008

Generation and phenotyping of a collection of sRNA gene deletion mutants of the haloarchaeon Haloferax volcanii

scientific article

Genetic identification of three ABC transporters as essential elements for nitrate respiration in Haloferax volcanii.

scientific article

Genome copy numbers and gene conversion in methanogenic archaea.

scientific article published on 19 November 2010

Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea.

scientific article

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

scientific article (publication date: 12 August 2016)

Genomics and functional genomics with haloarchaea.

scientific article published on 21 May 2008

Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.

scientific article published on 20 July 2007

Halobacterium sp. GRB: a species to work with!?

scientific article

Haloferax volcanii, a prokaryotic species that does not use the Shine Dalgarno mechanism for translation initiation at 5'-UTRs.

scientific article

Halophilic archaea cultivated from surface sterilized middle-late eocene rock salt are polyploid.

scientific article

High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.

scientific article published on July 2012

Identification of the enzyme responsible for N1-methylation of pseudouridine 54 in archaeal tRNAs.

scientific article

Influence of Origin Recognition Complex Proteins on the Copy Numbers of Three Chromosomes in Haloferax volcanii

scientific article published on 10 August 2018

Key Enzymes of the Semiphosphorylative Entner-Doudoroff Pathway in the Haloarchaeon Haloferax volcanii: Characterization of Glucose Dehydrogenase, Gluconate Dehydratase, and 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase

scientific article published on 13 June 2016

Lactose permease of Escherichia coli: properties of mutants defective in substrate translocation.

scientific article

Microarray analysis in the archaeon Halobacterium salinarum strain R1

scientific article

Nitrogen regulation of protein-protein interactions and transcript levels of GlnK PII regulator and AmtB ammonium transporter homologs in Archaea.

scientific article published on 28 August 2013

Normalized nucleotide frequencies allow the definition of archaeal promoter elements for different archaeal groups and reveal base-specific TFB contacts upstream of the TATA box.

scientific article

Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants.

scientific article

Phenotyping in the archaea: optimization of growth parameters and analysis of mutants of Haloferax volcanii

scientific article published on 19 July 2011

Ploidy in cyanobacteria.

scientific article

Polyploidy and community structure

scientific article published on 25 January 2017

Polyploidy in archaea and bacteria: about desiccation resistance, giant cell size, long-term survival, enforcement by a eukaryotic host and additional aspects

scientific article published on January 2014

Polyploidy in haloarchaea: advantages for growth and survival

scientific article published on 13 June 2014

Polyploidy in halophilic archaea: regulation, evolutionary advantages, and gene conversion

scientific article published on 12 June 2019

Prokaryotic structural maintenance of chromosomes (SMC) proteins: distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins ⬇️

scientific article published on October 31, 2001

Protein Acetylation in Archaea, Bacteria, and Eukaryotes ⬇️

scientific article published on September 16, 2010

Quantification of ploidy in proteobacteria revealed the existence of monoploid, (mero-)oligoploid and polyploid species

scientific article

Regulated Iron Siderophore Production of the Halophilic Archaeon Haloferax volcanii

scientific article published on 17 July 2020

Regulated ploidy of Bacillus subtilis and three new isolates of Bacillus and Paenibacillus.

scientific article published on 5 January 2018

Regulated polyploidy in halophilic archaea

scientific article

Regulation of translation in haloarchaea: 5'- and 3'-UTRs are essential and have to functionally interact in vivo

scientific article

Regulatory RNAs in Haloferax volcanii

scientific article published in January 2011

Several One-Domain Zinc Finger µ-Proteins of Haloferax Volcanii Are Important for Stress Adaptation, Biofilm Formation, and Swarming.

scientific article

Small RNAs in haloarchaea: identification, differential expression and biological function

scientific article

Small RNAs of the halophilic archaeon Haloferax volcanii

scientific article published in February 2009

Small regulatory RNAs in Archaea

scientific article

The Archaeal Lsm Protein Binds to Small RNAs ⬇️

scientific article published on September 7, 2010

The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation.

scientific article

The glpD gene is a novel reporter gene for E. coli that is superior to established reporter genes like lacZ and gusA.

scientific article published on 26 October 2016

The ploidy level of Synechocystis sp. PCC 6803 is highly variable and is influenced by growth phase and by chemical and physical external parameters.

scientific article

Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: expression, deletion mutants and evolution

scientific article published in October 2007

Transcriptome changes and cAMP oscillations in an archaeal cell cycle

scientific article

Translational coupling via termination-reinitiation in archaea and bacteria

scientific article published on 05 September 2019

Two hypotheses--one answer. Sequence comparison does not support an evolutionary link between halobacterial retinal proteins including bacteriorhodopsin and eukaryotic G-protein-coupled receptors

scientific article published on 01 March 1994

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