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List of works by Mohammad M Karimi

A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer

scientific article published on 17 July 2017

ALEA: a toolbox for allele-specific epigenomics analysis

scientific article published on 21 January 2014

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

scientific article

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations

scientific article published on 21 January 2015

Cell competition acts as a purifying selection to eliminate cells with mitochondrial defects during early mouse development

scientific article published on 12 July 2021

ChAsE: chromatin analysis and exploration tool.

scientific article published on 4 July 2016

Correction: hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells

scientific article published on 14 October 2016

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

scientific article published on June 2011

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).

scientific article published on 15 June 2018

Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma.

scientific article

Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells

scientific article (publication date: 4 June 2013)

FACT mediates cohesin function on chromatin

scientific article published on 03 October 2019

H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2.

scientific article

Haplotype inferring via galled-tree networks is NP-complete

scientific article published in October 2010

Hepatocyte Nuclear Factor 4-Alpha Is Essential for the Active Epigenetic State at Enhancers in Mouse Liver

scientific article published on 15 May 2019

Inhibition of Methyltransferase Setd7 Allows the In Vitro Expansion of Myogenic Stem Cells with Improved Therapeutic Potential.

scientific article published on 25 January 2018

LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq

scientific article published on 01 October 2019

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation

scientific article published in Nature Communications

On the role of H3.3 in retroviral silencing

scientific article published on 01 August 2017

Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma.

scientific article published on 17 August 2015

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

scientific article

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells

scientific article

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

scientific article published in January 2015

Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.

scientific article published on 12 April 2018

Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates.

scientific article published on 9 July 2018

Surveillance of cohesin-supported chromosome structure controls meiotic progression

scientific article published on 28 August 2020

VisRseq: R-based visual framework for analysis of sequencing data

scientific article

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells

scientific article published on 30 June 2013

hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells

scientific article

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