List of works - Ronald P de Vries

Nutritional physiology of a rock-inhabiting, model microcolonial fungus from an ancestral lineage of the Chaetothyriales (Ascomycetes).

scientific article

Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies

scientific article

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

scientific article

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse

scientific article published on 26 July 2013

Regulation of plant biomass utilization in Aspergillus

scientific article

The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d-galacturonic acid from pectin

scientific article published on 13 May 2016

Physiological and molecular aspects of degradation of plant polysaccharides by fungi: what have we learned from Aspergillus?

scientific article

Identification of genes encoding microbial glucuronoyl esterases

article

Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism

scientific article published in May 2003

aguA , the Gene Encoding an Extracellular α-Glucuronidase from Aspergillus tubingensis , Is Specifically Induced on Xylose and Not on Glucuronic Acid

scientific article published on January 1, 1998

Generic names in Magnaporthales

scientific article

Plant biomass degradation by fungi

scientific article

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

scientific article

The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism

scientific article published on 21 March 2009

Two glucuronoyl esterases of Phanerochaete chrysosporium

scientific article

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

scientific article

Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger.

scientific article

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

article

Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications

scientific article

Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans

scientific article published on July 2003

The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115).

scientific article published on 26 March 2011

Mapping the polysaccharide degradation potential of Aspergillus niger

scientific article

Localization of protein secretion in fungal colonies using a novel culturing technique; the ring-plate system

scientific article published on 18 January 2007

The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger

scientific article published on 27 June 2015

Aromatic metabolism of filamentous fungi in relation to the presence of aromatic compounds in plant biomass.

scientific article published on 24 February 2015

Xlr1 is involved in the transcriptional control of the pentose catabolic pathway, but not hemi-cellulolytic enzymes in Magnaporthe oryzae

scientific article published on 27 June 2013

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle.

scientific article published on 28 June 2015

Unique regulatory mechanism for D-galactose utilization in Aspergillus nidulans

scientific article published on 05 August 2011

The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes

scientific article

Carbohydrate-related enzymes of important Phytophthora plant pathogens

scientific article

The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions

scientific article

A genomic survey of proteases in Aspergilli

scientific article

The distinctive regulatory roles of PrtT in the cell metabolism of Penicillium oxalicum

scientific article

GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger

scientific article published on 12 October 2012

Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger

scientific article

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression

scientific article published on 18 November 2015

The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses.

scientific article

Efficient plant biomass degradation by thermophilic fungus Myceliophthora heterothallica

scientific article

Sugar catabolism in Aspergillus and other fungi related to the utilization of plant biomass

scientific article published on 12 November 2014

Spatial and developmental differentiation of mannitol dehydrogenase and mannitol-1-phosphate dehydrogenase in Aspergillus niger

scientific article

Synergistic effect of Aspergillus niger and Trichoderma reesei enzyme sets on the saccharification of wheat straw and sugarcane bagasse

scientific article

The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger.

scientific article published on 18 April 2017

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin

scientific article published on 27 September 2017

Growth and hydrolase profiles can be used as characteristics to distinguish Aspergillus niger and other black aspergilli.

scientific article

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

scientific article

D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger

scientific article published on 28 February 2012

Technical advance in fungal biotechnology: development of a miniaturized culture method and an automated high-throughput screening.

scientific article

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

scientific article

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

scientific article published on 10 August 2017

Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger

scientific article

List of works by Ronald P de Vries

Nutritional physiology of a rock-inhabiting, model microcolonial fungus from an ancestral lineage of the Chaetothyriales (Ascomycetes).

Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse

Regulation of plant biomass utilization in Aspergillus

The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d-galacturonic acid from pectin

Physiological and molecular aspects of degradation of plant polysaccharides by fungi: what have we learned from Aspergillus?

Identification of genes encoding microbial glucuronoyl esterases

Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism

aguA , the Gene Encoding an Extracellular α-Glucuronidase from Aspergillus tubingensis , Is Specifically Induced on Xylose and Not on Glucuronic Acid

Generic names in Magnaporthales

Plant biomass degradation by fungi

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism

Two glucuronoyl esterases of Phanerochaete chrysosporium

Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen

Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger.

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications

Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans

The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115).

Mapping the polysaccharide degradation potential of Aspergillus niger

Localization of protein secretion in fungal colonies using a novel culturing technique; the ring-plate system

The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger

Aromatic metabolism of filamentous fungi in relation to the presence of aromatic compounds in plant biomass.

Xlr1 is involved in the transcriptional control of the pentose catabolic pathway, but not hemi-cellulolytic enzymes in Magnaporthe oryzae

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle.

Unique regulatory mechanism for D-galactose utilization in Aspergillus nidulans

The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes

Carbohydrate-related enzymes of important Phytophthora plant pathogens

The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions

A genomic survey of proteases in Aspergilli

The distinctive regulatory roles of PrtT in the cell metabolism of Penicillium oxalicum

GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger

Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression

The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses.

Efficient plant biomass degradation by thermophilic fungus Myceliophthora heterothallica

Sugar catabolism in Aspergillus and other fungi related to the utilization of plant biomass

Spatial and developmental differentiation of mannitol dehydrogenase and mannitol-1-phosphate dehydrogenase in Aspergillus niger

Synergistic effect of Aspergillus niger and Trichoderma reesei enzyme sets on the saccharification of wheat straw and sugarcane bagasse

The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger.

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin

Growth and hydrolase profiles can be used as characteristics to distinguish Aspergillus niger and other black aspergilli.

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger

Technical advance in fungal biotechnology: development of a miniaturized culture method and an automated high-throughput screening.

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes

Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger