List of works - Marian Groot Koerkamp

Aberrant expression and distribution of enzymes of the urea cycle and other ammonia metabolizing pathways in dogs with congenital portosystemic shunts

scientific article

Aberrant gene expression in dogs with portosystemic shunts

scientific article

Amygdala 14-3-3ζ as a novel modulator of escalating alcohol intake in mice.

scientific article

Balancing of Histone H3K4 Methylation States by the Kdm5c/SMCX Histone Demethylase Modulates Promoter and Enhancer Function

scientific article published on 28 March 2013

Caenorhabditis elegans cyclin D/CDK4 and cyclin E/CDK2 induce distinct cell cycle re-entry programs in differentiated muscle cells

scientific article (publication date: November 2011)

Cell cycle population effects in perturbation studies

scientific article published on 21 June 2014

Cellular host transcriptional responses to influenza A virus in chicken tracheal organ cultures differ from responses in in vivo infected trachea

scientific article

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome

scientific article

Critical roles for a genetic code alteration in the evolution of the genus Candida

scientific article

Detailed analysis of the genetic and epigenetic signatures of iPSC-derived mesodiencephalic dopaminergic neurons.

scientific article published on 3 April 2014

Differential expression of genes involved in skin homing, proliferation, and apoptosis in CD4+ T cells of patients with atopic dermatitis.

scientific article

Differential gene-expression and host-response profiles against avian influenza virus within the chicken lung due to anatomy and airflow

scientific article published on 3 June 2009

Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays

scientific article

Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources

scientific article

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression

scientific journal article

EBV MicroRNA BART16 Suppresses Type I IFN Signaling.

scientific article published on 17 April 2017

Early host responses to avian influenza A virus are prolonged and enhanced at transcriptional level depending on maturation of the immune system

scientific article published on 10 April 2010

Elucidation of the distal convoluted tubule transcriptome identifies new candidate genes involved in renal Mg(2+) handling

scientific article published on 2 October 2013

Exploring gene expression signatures for predicting disease free survival after resection of colorectal cancer liver metastases

scientific article

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

scientific article published in December 2010

Gene expression profiling of early intervertebral disc degeneration reveals a down-regulation of canonical Wnt signaling and caveolin-1 expression: implications for development of regenerative strategies.

scientific article published on 29 January 2013

Gene expression profiling of histiocytic sarcomas in a canine model: the predisposed flatcoated retriever dog

scientific article

Genetic profiling of aortic allografts: prothymosin alpha as potential target?

scientific article published on 01 August 2005

Genome wide expression profiling of the mesodiencephalic region identifies novel factors involved in early and late dopaminergic development

scientific article published on 17 May 2012

Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA.

scientific article published on April 2006

Identification of genes targeted by FSH and oocytes in porcine granulosa cells ⬇️

scientific article published on October 20, 2010

In vitrosite-directed mutagenesis with synthetic DNA oligonucleotides yields unexpected deletions and insertions at high frequency ⬇️

scientific article published on December 20, 1983

Insulin-FOXO3 signaling modulates circadian rhythms via regulation of clock transcription.

scientific article published on 22 May 2014

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

scientific article

Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2

scientific journal article

Lmx1a is an activator of Rgs4 and Grb10 and is responsible for the correct specification of rostral and medial mdDA neurons.

scientific article

Maintenance of Head and Neck Tumor Gene Expression Profiles upon Lymph Node Metastasis

article

Modulation of glutamine metabolism by the PI(3)K-PKB-FOXO network regulates autophagy.

scientific article

Mouse hepatitis coronavirus replication induces host translational shutoff and mRNA decay, with concomitant formation of stress granules and processing bodies

scientific article published on 08 May 2007

Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity

scientific article

Reduced immune reaction prevents immunopathology after challenge with avian influenza virus: a transcriptomics analysis of adjuvanted vaccines

scientific article published on 14 July 2010

Retinoic acid-dependent and -independent gene-regulatory pathways of Pitx3 in meso-diencephalic dopaminergic neurons

scientific article published in December 2011

Shortening of membrane lipid acyl chains compensates for phosphatidylcholine deficiency in choline-auxotroph yeast

scientific article published on 14 September 2021

Specification of dopaminergic subsets involves interplay of En1 and Pitx3

scientific journal article

Splice site selection by intron aI3 of the COX1 gene from Saccharomyces cerevisiae ⬇️

scientific article published on August 11, 1992

The cytosolic DnaJ-like protein djp1p is involved specifically in peroxisomal protein import

scientific article

The genomic landscape of compensatory evolution

scientific article

The two main forms of histiocytic sarcoma in the predisposed Flatcoated retriever dog display variation in gene expression

scientific article

Tight control of MEK-ERK activation is essential in regulating proliferation, survival, and cytokine production of CD34+-derived neutrophil progenitors.

scientific article

Translation of branched-chain aminotransferase-1 transcripts is impaired in cells haploinsufficient for ribosomal protein genes.

scientific article published on 23 January 2014

Type I interferon receptor-independent and -dependent host transcriptional responses to mouse hepatitis coronavirus infection in vivo

scientific article

Uterine selection of human embryos at implantation

scientific article (publication date: 6 February 2014)

List of works by Marian Groot Koerkamp

Aberrant expression and distribution of enzymes of the urea cycle and other ammonia metabolizing pathways in dogs with congenital portosystemic shunts

Aberrant gene expression in dogs with portosystemic shunts

Amygdala 14-3-3ζ as a novel modulator of escalating alcohol intake in mice.

Balancing of Histone H3K4 Methylation States by the Kdm5c/SMCX Histone Demethylase Modulates Promoter and Enhancer Function

Caenorhabditis elegans cyclin D/CDK4 and cyclin E/CDK2 induce distinct cell cycle re-entry programs in differentiated muscle cells

Cell cycle population effects in perturbation studies

Cellular host transcriptional responses to influenza A virus in chicken tracheal organ cultures differ from responses in in vivo infected trachea

Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome

Critical roles for a genetic code alteration in the evolution of the genus Candida

Detailed analysis of the genetic and epigenetic signatures of iPSC-derived mesodiencephalic dopaminergic neurons.

Differential expression of genes involved in skin homing, proliferation, and apoptosis in CD4+ T cells of patients with atopic dermatitis.

Differential gene-expression and host-response profiles against avian influenza virus within the chicken lung due to anatomy and airflow

Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays

Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression

EBV MicroRNA BART16 Suppresses Type I IFN Signaling.

Early host responses to avian influenza A virus are prolonged and enhanced at transcriptional level depending on maturation of the immune system

Elucidation of the distal convoluted tubule transcriptome identifies new candidate genes involved in renal Mg(2+) handling

Exploring gene expression signatures for predicting disease free survival after resection of colorectal cancer liver metastases

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

Gene expression profiling of early intervertebral disc degeneration reveals a down-regulation of canonical Wnt signaling and caveolin-1 expression: implications for development of regenerative strategies.

Gene expression profiling of histiocytic sarcomas in a canine model: the predisposed flatcoated retriever dog

Genetic profiling of aortic allografts: prothymosin alpha as potential target?

Genome wide expression profiling of the mesodiencephalic region identifies novel factors involved in early and late dopaminergic development

Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA.

Identification of genes targeted by FSH and oocytes in porcine granulosa cells ⬇️

In vitrosite-directed mutagenesis with synthetic DNA oligonucleotides yields unexpected deletions and insertions at high frequency ⬇️

Insulin-FOXO3 signaling modulates circadian rhythms via regulation of clock transcription.

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2

Lmx1a is an activator of Rgs4 and Grb10 and is responsible for the correct specification of rostral and medial mdDA neurons.

Maintenance of Head and Neck Tumor Gene Expression Profiles upon Lymph Node Metastasis

Modulation of glutamine metabolism by the PI(3)K-PKB-FOXO network regulates autophagy.

Mouse hepatitis coronavirus replication induces host translational shutoff and mRNA decay, with concomitant formation of stress granules and processing bodies

Redox-sensitive cysteines bridge p300/CBP-mediated acetylation and FoxO4 activity

Reduced immune reaction prevents immunopathology after challenge with avian influenza virus: a transcriptomics analysis of adjuvanted vaccines

Retinoic acid-dependent and -independent gene-regulatory pathways of Pitx3 in meso-diencephalic dopaminergic neurons

Shortening of membrane lipid acyl chains compensates for phosphatidylcholine deficiency in choline-auxotroph yeast

Specification of dopaminergic subsets involves interplay of En1 and Pitx3

Splice site selection by intron aI3 of the COX1 gene from Saccharomyces cerevisiae ⬇️

The cytosolic DnaJ-like protein djp1p is involved specifically in peroxisomal protein import

The genomic landscape of compensatory evolution

The two main forms of histiocytic sarcoma in the predisposed Flatcoated retriever dog display variation in gene expression

Tight control of MEK-ERK activation is essential in regulating proliferation, survival, and cytokine production of CD34+-derived neutrophil progenitors.

Translation of branched-chain aminotransferase-1 transcripts is impaired in cells haploinsufficient for ribosomal protein genes.

Type I interferon receptor-independent and -dependent host transcriptional responses to mouse hepatitis coronavirus infection in vivo

Uterine selection of human embryos at implantation