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List of works by Anita C. Schürch

Assembly of viral genomes from metagenomes

scientific article

CRISPR/Cas9-Mediated Genome Editing of Herpesviruses Limits Productive and Latent Infections

scientific article

Challenges and opportunities for whole-genome sequencing-based surveillance of antibiotic resistance

scientific article

Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array

scientific article

Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints

scientific article published on 4 April 2012

Comparative genomics of ESBL-producing Escherichia coli (ESBL-Ec) reveals a similar distribution of the 10 most prevalent ESBL-Ec clones and ESBL genes among human community faecal and extra-intestinal infection isolates in the Netherlands (2014-17)

scientific article published on 01 March 2021

DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing

scientific article published on 3 November 2011

European 2 – A clonal complex of Mycobacterium bovis dominant in the Iberian Peninsula

scientific article published on 14 September 2011

Exploring the potential of next-generation sequencing in detection of respiratory viruses

scientific article

Genetic relatedness of dolphin rhabdovirus with fish rhabdoviruses

scientific article published on June 2014

Genomic tracing of epidemics and disease outbreaks

scientific article

High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster

scientific article

Identification of HCV Resistant Variants against Direct Acting Antivirals in Plasma and Liver of Treatment Naïve Patients

scientific article

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

scientific article

Metagenomic survey for viruses in Western Arctic caribou, Alaska, through iterative assembly of taxonomic units

scientific article

Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype

scientific article published on 28 January 2011

New viruses in idiopathic human diarrhea cases, the Netherlands

scientific article

Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010-2011.

scientific article

Novel divergent nidovirus in a python with pneumonia

scientific article

Novel divergent rhabdovirus in feces of red fox, Spain

scientific article published in December 2014

Optimization of standard in-house 24-locus variable-number tandem-repeat typing for Mycobacterium tuberculosis and its direct application to clinical material

scientific article published on 05 February 2014

Physical mapping and identification of a candidate for the leaf rust resistance gene Lr1 of wheat

scientific article

Picobirnaviruses in the human respiratory tract

scientific article published on September 2012

Preferential deletion events in the direct repeat locus of Mycobacterium tuberculosis

scientific article

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database

scientific article

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data

scientific article published in 2021

Recovering full-length viral genomes from metagenomes

scientific article

SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes

scientific article

The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale

scientific article published on 14 October 2009

Virus characterization and discovery in formalin-fixed paraffin-embedded tissues

scientific article published on 12 February 2015

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