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List of works by Sophie S Abby

A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin

scientific article published on 6 July 2012

Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments

scientific article

Asynchronous division by non-ring FtsZ in the gammaproteobacterial symbiont of Robbea hypermnestra.

scientific article

Bacteria in Ostreococcus tauri cultures - friends, foes or hitchhikers?

scientific article

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome.

scientific article published on 26 January 2018

Comparative genomics and the evolution of prokaryotes.

scientific article published on 7 February 2007

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

scientific article

Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

scientific article published on 19 July 2019

Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation

scientific article published on 14 July 2020

Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages

scientific article

Geochemical transition zone powering microbial growth in subsurface sediments

scientific article published on 07 December 2020

Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder

scientific article

Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens.

scientific article published on 2 February 2012

Investment in rapid growth shapes the evolutionary rates of essential proteins ⬇️

scientific article (publication date: 13 December 2011)

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

scientific article

Lateral gene transfer as a support for the tree of life

scientific article

Les transferts horizontaux de gènes et l’arbre de la vie ⬇️

scientific article published on August 22, 2012

MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

scientific article

Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

scientific article

Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size.

scientific article published on 29 March 2018

Testing for Independence between Evolutionary Processes

scientific article published on 21 May 2016

The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

scientific article

Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway

scientific article published on 09 July 2019

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