List of works by Vincent Gardeux

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine

scientific article

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations

scientific article published on November 2017

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

scientific article published on 19 April 2022

A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors

scientific article published on 27 May 2020

ARTS: automated randomization of multiple traits for study design

scientific article published on 3 February 2014

ASAP: a Web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

scientific article

Are we able to predict survival in ER-positive HER2-negative breast cancer? A comparison of web-based models

scientific article published on 15 January 2015

BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing

scientific article published on 19 April 2019

COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling

scientific article published on 14 November 2014

Computing molecular signatures as optima of a bi-objective function: method and application to prediction in oncogenomics.

scientific article published on 19 April 2015

Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study

scientific article

Disparate temperature-dependent virus – host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium

scientific article published on 28 April 2020

Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium

scientific article published on 29 March 2021

Dissecting the brown adipogenic regulatory network using integrative genomics

scientific article published on 09 February 2017

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival

scientific article published on June 2015

Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle

scientific article published on 03 December 2019

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

scientific article published on 4 March 2022

In Silico cancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment.

scientific article

Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions

scientific article published on 27 April 2016

N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

scientific article

Profiling of Single-Cell Transcriptomes

scientific article published on 8 September 2017

Sex-dependent and sex-independent regulatory systems of size variation in natural populations

scientific article published on 01 November 2019

The Genetics of Transcription Factor DNA Binding Variation

scientific article

The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools

scientific article

Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes

scientific article published on 19 March 2015

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs.

scientific article published on 30 October 2015

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects

scientific article published on 19 December 2016

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