List of works by John A Lees

A database for the epidemic trends and control measures during the first wave of COVID-19 in mainland China

scientific article published on 29 October 2020

A sub-national analysis of the rate of transmission of COVID-19 in Italy

scientific article published on 09 May 2020

Adults with suspected central nervous system infection: A prospective study of diagnostic accuracy

scientific article

Bacterial GWAS: not just gilding the lily

scientific article published on 31 May 2016

Benzalkonium tolerance genes and outcome in Listeria monocytogenes meningitis.

scientific article

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

scientific article

Fast and flexible bacterial genomic epidemiology with PopPUNK

scientific article published on 24 January 2019

Fast hierarchical Bayesian analysis of population structure

scientific article published on 01 June 2019

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

scientific article

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

scientific article published on 20 May 2020

Immune exclusion by naturally acquired secretory IgA against pneumococcal pilus-1 ⬇️

scientific article published on 01 February 2020

Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia

Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia

scientific article published on 13 November 2023

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

scientific article published on 07 July 2020

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

scientific article published on 16 April 2019

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

scholarly article

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

scientific article published on 15 May 2019

Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis

scientific article published on 31 January 2017

Large scale genomic analysis shows no evidence for repeated pathogen adaptation during the invasive phase of bacterial meningitis in humans

Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently

scientific article published on 23 September 2016

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study

scientific article published on 10 June 2019

Pneumococcal quorum sensing drives an asymmetric owner-intruder competitive strategy during carriage via the competence regulon

scientific article published in January 2019

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

scientific article published on 13 July 2020

R-M systems go on the offensive

scientific article published on 2 February 2015

Reduction in mobility and COVID-19 transmission

scholarly article by Pierre Nouvellet published in 2021

Report 21: Estimating COVID-19 cases and reproduction number in Brazil

scientific article published on 18 May 2020

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS

scientific article published on 30 July 2018

SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China

scientific article published on 24 August 2020

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

scientific article published on 16 September 2016

State-level tracking of COVID-19 in the United States

scientific article published on 03 December 2020

Stronger together

scientific article published on 07 August 2017

The potential public health consequences of COVID-19 on malaria in Africa

scientific article published on 07 August 2020

Using genomics to combat infectious diseases on a global scale.

scientific article published on 19 November 2015

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates

scientific article published on 30 April 2020

Within-Host Sampling of a Natural Population Shows Signs of Selection on Pde1 during Bacterial Meningitis

scientific article published on 23 February 2017

pyseer: a comprehensive tool for microbial pangenome-wide association studies

scientific article published on 01 December 2018

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