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List of works by Charles G Danko

A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer.

scientific article published on 3 April 2018

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

A unified architecture of transcriptional regulatory elements

scientific article published on 11 June 2015

AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks

scientific article published on 01 June 2019

Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq).

scientific article

Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme

article

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

E-Protein Inhibition in ILC2 Development Shapes the Function of Mature ILC2s during Allergic Airway Inflammation

scientific article published on 18 February 2022

ER-positive breast cancer cells are poised for RET-mediated endocrine resistance.

scientific article

Genetic dissection of the RNA polymerase II transcription cycle

scientific article published on 01 July 2022

Identification of regulatory elements from nascent transcription using dREG

scientific article published on 20 December 2018

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

scientific article published on 3 January 2017

Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone

scientific article published on 25 September 2020

Poised for development

scientific article published in July 2016

RTFBSDB: an integrated framework for transcription factor binding site analysis

scientific article published on 10 June 2016

Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

article published in 2018

Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

scientific article published on 17 December 2018

The H2BG53D oncohistone directly upregulates ANXA3 transcription and enhances cell migration in pancreatic ductal adenocarcinoma

scientific article published on 30 June 2020

Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis

scientific article published on 12 April 2021

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris).

scientific article published on 20 October 2017

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data

scientific article

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