Search filters

List of works by Nicola Mulder

A Genomic and Protein-Protein Interaction Analyses of Nonsyndromic Hearing Impairment in Cameroon Using Targeted Genomic Enrichment and Massively Parallel Sequencing.

scientific article published on 11 January 2017

A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae

scientific article published on 29 March 2016

A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology ⬇️

scientific article published on May 15, 2012

A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study

scientific article published in PLoS ONE

A comprehensive survey of models for dissecting local ancestry deconvolution in human genome

scholarly article by Ephifania Geza published in June 2018

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations

scientific article

A global perspective on bioinformatics training needs

A mathematical representation of the development of Mycobacterium tuberculosis active, latent and dormant stages ⬇️

scientific article published on September 29, 2011

A multi-scenario genome-wide medical population genetics simulation framework.

scientific article published on October 2017

A quick guide for building a successful bioinformatics community

scientific article

A review of clinical pharmacogenetics Studies in African populations

scientific article published on 03 March 2020

A systems-level analysis of drug-target-disease associations for drug repositioning

scientific article published on 17 August 2017

A web-based protein interaction network visualizer

scientific article

A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool

scientific article published on 17 October 2015

A19 The impact of HIV-1 on the evolution of Mycobacterium tuberculosis.

scientific article

ANIMA: Association Network Integration for Multiscale Analysis

ANIMA: Association network integration for multiscale analysis

scientific article published on 14 November 2018

Accessing Biospecimens from the H3Africa Consortium.

scientific article published in April 2017

Accumulation of splice variants and transcripts in response to PI3K inhibition in T cells

scientific article

Advancing the international data science workforce through shared training and education

scholarly article by John Darrell Van Horn published in March 2019

Afri-Can Forum 2 : Johannesburg, South Africa. 16-18 February 2015

Analysis of Duplicate Gene Families in Microbial Genomes and Application to the Study of Gene Duplication in M. tuberculosis

article

Applications of InterPro in protein annotation and genome analysis

scientific article published on September 2002

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

scientific article

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

scientific article

Bamako 2009 conference on the bioinformatics of infectious diseases

scientific article

Best practices in bioinformatics training for life scientists

scientific article published on 25 June 2013

Bioinformatics education--perspectives and challenges out of Africa

scientific article

Biotechnology Innovators To Convene in Cape Town, South Africa: Pharmacogenetics and Precision Medicine Conference (April 7-9, 2016).

scientific article

Change on the fly: using machine learning in the monitoring and evaluation of digital health programs to improve evidence generation and implementation in real time (Preprint)

article

Characterization of a Mycobacterium tuberculosis homologue of the Streptomyces coelicolor whiB gene.

scientific article published in January 1999

Classification of proteins into families

Co-infection with Mycobacterium tuberculosis and human immunodeficiency virus: an overview and motivation for systems approaches

scientific article published on 17 July 2013

Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis.

scientific article

Contribution of microarray data to the advancement of knowledge on the Mycobacterium tuberculosis interactome: Use of the random partial least squares approach

scholarly article by Gaston K Mazandu et al published June 2011 in Infection, Genetics and Evolution

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 14 May 2015

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article published on 8 January 2007

DAS writeback: a collaborative annotation system ⬇️

scientific article

DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

scientific article

Dasty3, a WEB framework for DAS.

scientific article published on 28 July 2011

Data acquisition and data/knowledge sharing in global genomic studies

scientific article

Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience

scientific article published on 5 October 2017

Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method

scientific article

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

scientific article published on 29 November 2018

Development of Bioinformatics Infrastructure for Genomics Research in H3Africa.

scientific article published on 13 March 2017

Development to enable precision medicine in Africa

article

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

scientific article published on 07 July 2018

Does having a mobile phone matter? Linking phone access among women to health in India: An exploratory analysis of the National Family Health Survey

scientific article published on 20 July 2020

Editorial: The Genetic and Environmental Basis for Diseases in Understudied Populations

scientific article published on 23 September 2020

Environmental and social factors impacting on epidemic and endemic tuberculosis: a modelling analysis

scientific article published on 17 January 2018

Ethical and practical issues to consider in the governance of genomic and human research data and data sharing in South Africa: a meeting report

scientific article published on 22 May 2019

Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants

scientific article published on 5 April 2018

Four simple recommendations to encourage best practices in research software

scientific article

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems ⬇️

scientific article

Function Prediction and Analysis of Mycobacterium tuberculosis Hypothetical Proteins ⬇️

scientific article published on June 13, 2012

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

scientific article published on 9 April 2015

GenGraph: a python module for the simple generation and manipulation of genome graphs

scientific article published on 25 October 2019

Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

scientific article published on 29 July 2016

Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification

scientific article

Genetic modifiers of long-term survival in sickle cell anemia

scientific article published on 01 August 2020

Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease

scholarly article published 8 June 2018

Genome-wide association study of ancestry-specific TB risk in the South African Coloured population

scientific journal article

Genomic Research Data Generation, Analysis and Sharing – Challenges in the African Setting

Getting the most out of protein family classification resources

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa.

scientific article

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

scientific article

H3ABioNet: Developing Sustainable Bioinformatics Capacity in Africa

article

HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort.

scientific article

Hackathons as a means of accelerating scientific discoveries and knowledge transfer

scientific article published on 12 April 2018

High rates of bacterial vaginosis and Chlamydia in a low-income, high-population-density community in Cape Town

High-depth African genomes inform human migration and health

scientific article published on 28 October 2020

Host and Microbiome Genome-Wide Association Studies: Current State and Challenges

scientific article published on 01 January 2018

Hoë voorkomskoers van bakteriële vaginose en Chlamydia in ’n lae-inkomste, hoë-bevolkingsdigtheid gemeenskap in Kaapstad

Hypothalamic-pituitary-adrenal axis suppression in asthma: A glucocorticoid receptor polymorphism may protect

scientific article published on 24 September 2020

Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences

Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence

scientific article published on 31 May 2016

Impact of effective contact rate and post treatment immune status on population tuberculosis infection and disease using a mathematical model

article

In Silico Characterization of Proteins InterPro and Proteome Analysis

In silico characterization of proteins: UniProt, InterPro and Integr8.

scientific article published on 04 October 2007

Information content-based Gene Ontology functional similarity measures: which one to use for a given biological data type?

scientific article

Information content-based gene ontology semantic similarity approaches: toward a unified framework theory

scientific article published on 02 September 2013

Initial sequencing and analysis of the human genome

scientific article published on 15 February 2001

Integrated molecular characterisation of the MAPK pathways in human cancers reveals pharmacologically vulnerable mutations and gene dependencies

scientific article published in 2021

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Integrative landscape of dysregulated signaling pathways of clinically distinct pancreatic cancer subtypes

InterPro

article

InterPro and InterProScan: tools for protein sequence classification and comparison

scientific article

InterPro and Proteome Analysis — In silico Analysis of Proteins and Proteomes

InterPro in 2011: new developments in the family and domain prediction database

scientific article

InterPro in 2011: new developments in the family and domain prediction database

scientific article published on 19 May 2012

InterPro, progress and status in 2005

scientific article

InterPro--an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: December 2000)

InterPro: an integrated documentation resource for protein families, domains and functional sites

scientific article

InterPro: the integrative protein signature database

scientific article

Investigating the effect of paralogs on microarray gene-set analysis

scientific article

Large-scale data-driven integrative framework for extracting essential targets and processes from disease-associated gene data sets

scientific article

Latent Tuberculosis: Models, Computational Efforts and the Pathogen's Regulatory Mechanisms during Dormancy

scientific article published on 27 August 2013

Leveraging crowdsourcing to accelerate global health solutions

scientific article published on 01 August 2019

Machine Learning and Network Analyses Reveal Disease Subtypes of Pancreatic Cancer and their Molecular Characteristics

scientific article published on 27 January 2020

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

scientific article published on February 2012

Metabolic gene alterations impact the clinical aggressiveness and drug responses of 32 human cancers

scientific article published on 14 November 2019

Microbial Composition Predicts Genital Tract Inflammation and Persistent Bacterial Vaginosis in South African Adolescent Females

scientific article published on 16 October 2017

Microbial function and genital inflammation in young South African women at high risk of HIV infection

scientific article published on 21 November 2020

Modelling the risk of airborne infectious disease using exhaled air.

scientific article published on 19 February 2015

MyDas, an extensible Java DAS server

scientific article

New developments in the InterPro database

scientific article published in January 2007

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

scholarly article published 18 April 2018

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience ⬇️

scientific article published on 18 April 2018

PPI layouts: BioJS components for the display of Protein-Protein Interactions

scientific article

Population-specific common SNPs reflect demographic histories and highlight regions of genomic plasticity with functional relevance

scientific article

Predicting and analyzing interactions between Mycobacterium tuberculosis and its human host

scientific article (publication date: 2013)

Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease

scientific article published on 15 March 2016

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity

scientific article

Proposed minimum information guideline for kidney disease-research and clinical data reporting: a cross-sectional study

scientific article published on 26 November 2019

Protein Family Databases

Protein Family Databases

Protein Function Microarrays: Design, Use and Bioinformatic Analysis in Cancer Biomarker Discovery and Quantitation

Protein domain architectures

scientific article

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry

scientific article published on 5 April 2016

Real-Time Investigation of Tuberculosis Transmission: Developing the Respiratory Aerosol Sampling Chamber (RASC)

scientific article

Recent advances in predicting gene-disease associations

scientific article

Research capacity. Enabling the genomic revolution in Africa

scientific article published in June 2014

Scoring Protein Relationships in Functional Interaction Networks Predicted from Sequence Data ⬇️

scientific article (publication date: 19 April 2011)

Sickle cell disease: tipping the balance of genomic research to catalyse discoveries in Africa

scholarly article

SickleInAfrica

scientific article published on 01 February 2020

Strategies and opportunities for promoting bioinformatics in Zimbabwe

scientific article published on 29 November 2018

Ten simple rules for developing bioinformatics capacity at an academic institution

scientific article published in 2021

Ten simple rules for forming a scientific professional society

scientific article published on 23 March 2017

Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries

scientific article published on 19 August 2021

Ten simple rules for organizing a webinar series

scientific article published on 01 April 2019

The African Genomic Medicine Training Initiative (AGMT): Showcasing a Community and Framework Driven Genomic Medicine Training for Nurses in Africa

scientific article published on 20 December 2019

The Data Use Ontology to streamline responsible access to human biomedical datasets

scientific article published on 10 November 2021

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

scientific article published on 4 February 2016

The European Bioinformatics Institute's data resources.

scientific article

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

scientific article published on 12 March 2003

The H3Africa policy framework: negotiating fairness in genomics

scientific article

The Influence of HIV on the Evolution of Mycobacterium tuberculosis

scientific article

The InterPro Database and Tools for Protein Domain Analysis

The InterPro database and tools for protein domain analysis

scientific article

The InterPro database, 2003 brings increased coverage and new features

scientific article (publication date: 2003)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

scientific article (publication date: 2001)

The Mycobacterium tuberculosis mysB gene product is a functional equivalent of the Escherichia coli sigma factor, KatF

scientific journal article

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

scientific article published on January 2003

The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications

scientific article published on 01 October 2020

The development and application of bioinformatics core competencies to improve bioinformatics training and education

scientific article published in February 2018

The minimum information required for reporting a molecular interaction experiment (MIMIx).

scientific article published on August 2007

The transcriptional landscape of the mammalian genome

scientific article

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

scientific article

Tools and resources for identifying protein families, domains and motifs

scientific article

Understanding TB latency using computational and dynamic modelling procedures ⬇️

scientific article published on November 10, 2012

Use of big data and machine learning methods in monitoring and evaluation of digital health programs : An exploratory protocol in the Indian setting (Preprint)

article

Using Whole Genome Sequencing in an African Subphenotype of Myasthenia Gravis to Generate a Pathogenetic Hypothesis

scientific article published on 01 March 2019

Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa

scientific article published on 25 February 2021

Using biological networks to improve our understanding of infectious diseases

scientific article

Using the underlying biological organization of the Mycobacterium tuberculosis functional network for protein function prediction ⬇️

scientific article published on November 7, 2011

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.

scientific article published on 12 December 2017

[InterPro as a new tool for whole genome analysis. A comparative analysis of Mycobacterium tuberculosis, Bacillus subtilis and Escherichia coli as a case study]

scientific article

ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations

scientific article published on 27 October 2015

iAnn: an event sharing platform for the life sciences

scientific article published on 05 June 2013

myKaryoView: a light-weight client for visualization of genomic data

scientific article published in 2011

Paulina is supported by:

About Paulina

Help