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List of works by Cock van Oosterhout

A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments.

scientific article

A further cost for the sicker sex? Evidence for male-biased parasite-induced vulnerability to predation

scientific article published on 14 March 2016

A new theory of MHC evolution: beyond selection on the immune genes

article

Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae)

scientific article

Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field

article

An aphid RNA transcript migrates systemically within plants and is a virulence factor

scientific article published on 27 May 2020

Assortative mating among Lake Malawi cichlid fish populations is not simply predictable from male nuptial colour

scientific article

Avian β-defensin variation in bottlenecked populations: the Seychelles warbler and other congeners

BALANCING SELECTION, RANDOM GENETIC DRIFT, AND GENETIC VARIATION AT THE MAJOR HISTOCOMPATIBILITY COMPLEX IN TWO WILD POPULATIONS OF GUPPIES (POECILIA RETICULATA)

article published in 2006

BALANCING SELECTION, RANDOM GENETIC DRIFT, AND GENETIC VARIATION AT THE MAJOR HISTOCOMPATIBILITY COMPLEX IN TWO WILD POPULATIONS OF GUPPIES (POECILIA RETICULATA)

scientific article published on 01 December 2006

Biocontrol of common carp in Australia poses risks to biosecurity

scientific article

Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus.

scientific article published on 10 October 2017

Can parasites use predators to spread between primary hosts?

scientific article published on 29 May 2013

Chromosome-scale genome assemblies of aphids reveal extensively rearranged autosomes and long-term conservation of the X chromosome

scientific article published on 23 September 2020

Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

scientific article published on 13 December 2018

Critical review of NGS analyses for de novo genotyping multigene families.

scientific article

Cryptic MHC Polymorphism Revealed but Not Explained by Selection on the Class IIB Peptide-Binding Region ⬇️

scientific article published on January 18, 2012

Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago

scientific article

Effect of gyrodactylid ectoparasites on host behaviour and social network structure in guppies Poecilia reticulata

scientific article published in 2011

Elevated mtDNA diversity in introduced populations of Cynotilapia afra (Günther 1894) in Lake Malawi National Park is evidence for multiple source populations and hybridization

scientific article published on 28 September 2009

Entering uncharted waters: Long-term dynamics of two data limited fish species, turbot and brill, in the North Sea

article

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

scientific article published on 4 April 2017

Estimates of genetic differentiation measured by F(ST) do not necessarily require large sample sizes when using many SNP markers

scientific article

Evidence for cryptic speciation in directly transmitted gyrodactylid parasites of Trinidadian guppies

scientific article

Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite

scientific article published on 27 February 2015

Evolution of MHC class IIB in the genome of wild and ornamental guppies, Poecilia reticulata

scientific article published on 31 May 2006

Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen

scientific article published on 3 November 2017

Evolutionary genomics of anthroponosis in Cryptosporidium

scientific article published on 04 March 2019

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

scientific article published on 16 January 2017

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

scientific article published in 2013

Experimental infections with the tropical monogenean, Gyrodactylus bullatarudis: potential invader or experimental fluke?

scientific article

Female guppies (Poecilia reticulata) show no preference for conspecific chemosensory cues in the field or an artificial flow chamber

Female preference for conspecific males based on olfactory cues in a Lake Malawi cichlid fish

scientific article

First polymorphic microsatellites for the gyrodactylids (Monogenea), an important group of fish pathogens

article

Functional immunogenetic variation, rather than local adaptation, predicts ectoparasite infection intensity in a model fish species

scientific article published in September 2021

Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populations

scientific article published on 22 November 2011

Genetic architecture and evolution of the S locus supergene in Primula vulgaris

scientific article published on 2 December 2016

Genetic population structure and contemporary dispersal patterns of a recent European invader, the Chinese mitten crab, Eriocheir sinensis

scientific article published in January 2007

Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies

scientific article

Genomic erosion in a demographically recovered bird species during conservation rescue

scientific article published in 2022

Getting into hot water: sick guppies frequent warmer thermal conditions

scientific article

Gyro-scope: an individual-based computer model to forecast gyrodactylid infections on fish hosts.

scientific article published on 14 October 2007

Gyrodactylus pictae n. sp. (Monogenea: Gyrodactylidae) from the Trinidadian swamp guppy Poecilia picta Regan, with a discussion on species of Gyrodactylus von Nordmann, 1832 and their poeciliid hosts

scientific article

HYBRIDCHECK: software for the rapid detection, visualization and dating of recombinant regions in genome sequence data.

scientific article

High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study

scientific article (publication date: 16 October 2013)

Human induced stepping-stone colonisation of an admixed founder population: the spread of topmouth gudgeon (Pseudorasbora parva) in Europe

article

Hybridisation has shaped a recent radiation of grass-feeding aphids

scientific article published in 2023

Hybridization generates a hopeful monster: a hermaphroditic selfing cichlid

scientific article

Immigrant reproductive dysfunction facilitates ecological speciation

scientific article

Immunogenetic novelty confers a selective advantage in host-pathogen coevolution.

scientific article published on 16 January 2018

Impact of a mouth parasite in a marine fish differs between geographical areas

Inbreeding depression and genetic load of sexually selected traits: how the guppy lost its spots

scientific article published on 10 February 2003

Inference of selection based on temporal genetic differentiation in the study of highly polymorphic multigene families

scientific article

Invasive cyprinid fish in Europe originate from the single introduction of an admixed source population followed by a complex pattern of spread ⬇️

scientific article

Invasive freshwater snails provide resource for native marine hermit crabs

scientific article published in 2013

MHC adaptive divergence between closely related and sympatric African cichlids

scientific article

Maintenance of major histocompatibility supertype variation in selfing vertebrate is no evidence for overdominant selection ⬇️

scientific article published on January 8, 2013

Means, motive and opportunity for biological invasions: Genetic introgression in a fungal pathogen

scientific article published on 25 January 2022

Mendelian inheritance pattern and high mutation rates of microsatellite alleles in the diatom Pseudo-nitzschia multistriata

scientific article published on 28 August 2012

Mismatch between molecular (mtDNA) and morphological classification of Macrobrachium prawns from Southern Nigeria: Cryptic freshwater species and brackish water morphotypes

Mixed infections and hybridisation in monogenean parasites

scientific article

Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana

scientific article

Mutation load is the spectre of species conservation

scientific article published on 04 May 2020

On the neutrality of molecular genetic markers: pedigree analysis of genetic variation in fragmented populations.

scientific article

Optimal release strategies for captive-bred animals in reintroduction programs: Experimental infections using the guppy as a model organism

article

Pace of life, predators and parasites: predator-induced life-history evolution in Trinidadian guppies predicts decrease in parasite tolerance.

scientific article

Parasite diversity and ecology in a model species, the guppy (Poecilia reticulata) in Trinidad

scientific article published on 22 January 2020

Parasite transmission in social interacting hosts: monogenean epidemics in guppies

scientific article

Parasites of Trinidadian guppies: evidence for sex- and age-specific trait-mediated indirect effects of predators

scientific article published on February 2015

Parasites pitched against nature: Pitch Lake water protects guppies (Poecilia reticulata) from microbial and gyrodactylid infections

scientific article published on 26 July 2012

Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes

scientific article published in 2018

Population genetic analysis of microsatellite variation of guppies (Poecilia reticulata) in Trinidad and Tobago: evidence for a dynamic source-sink metapopulation structure, founder events and population bottlenecks

article

Position, swimming direction and group size of fin whales (Balaenoptera physalus) in the presence of a fast-ferry in the Bay of Biscay

scholarly article by Ana S. Aniceto et al published July 2016 in Oceanologia

Purging and accumulation of genetic load in conservation

scientific article published in 2023

QUANTITATIVE GENETIC VARIATION IN BICYCLUS ANYNANA METAPOPULATIONS

scholarly article by Cock Van Oosterhout & Paul Martin Brakefield published 1 May 1999 in Animal Biology

Rapid loss of MHC class II variation in a bottlenecked population is explained by drift and loss of copy number variation

scientific article published on 23 May 2011

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

scientific article published on 13 February 2017

Real‐time genomics for One Health

scientific article published in 2023

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

scientific article published on 21 March 2018

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Secondary contact seeds phenotypic novelty in cichlid fishes

scientific article published in January 2015

Segregation of species-specific male attractiveness in f(2) hybrid lake Malawi cichlid fish

scientific article

Selection by parasites in spate conditions in wild Trinidadian guppies (Poecilia reticulata).

scientific article published on 14 January 2007

Sex-specific changes in the aphid DNA methylation landscape

Sex-specific changes in the aphid DNA methylation landscape

scientific article published on 22 September 2019

Sex-specific differences in shoaling affect parasite transmission in guppies

scientific article

Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua).

scientific article published in October 2003

The MC1R gene in the guppy (Poecilia reticulata): Genotypic and phenotypic polymorphisms

scientific article

The effect of extrinsic mortality on genome size evolution in prokaryotes.

scientific article published on 6 December 2016

The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile, Podarcis erhardii.

scientific article

The effects of inbreeding on disease susceptibility: Gyrodactylus turnbulli infection of guppies, Poecilia reticulata.

scientific article

The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses

scientific article

The genetics of mate preferences in hybrids between two young and sympatric Lake Victoria cichlid species.

scientific article

The guppy as a conservation model: implications of parasitism and inbreeding for reintroduction success

scientific article published in December 2007

The impact of parasites on the life history evolution of guppies (Poecilia reticulata): the effects of host size on parasite virulence

scientific article published on 10 May 2007

The role of phenotypic plasticity and epigenetics in experimental evolution with phytoplankton

scholarly article published 1 April 2016

Toll-like receptor variation in the bottlenecked population of the Seychelles warbler: computer simulations see the 'ghost of selection past' and quantify the 'drift debt'.

scientific article

Trans-species polymorphism, HLA-disease associations and the evolution of the MHC.

scientific article published on September 2009

Transposons in the MHC: the Yin and Yang of the vertebrate immune system

scientific article published on 29 April 2009

Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata).

scientific article published on 5 February 2014

Upstream guppies (Poecilia reticulata, Peters, 1859) go against the flow

scientific article published in 2012

Wondering about wandering whiting: Distribution of North Sea whiting between the 1920s and 2000s

article

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