List of works - Sébastien Duplessis

12 Rust Fungi: Achievements and Future Challenges on Genomics and Host–Parasite Interactions

article

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

scientific article published on June 2011

Two stripe rust effectors impair wheat resistance by suppressing import of host Fe–S protein into chloroplasts

scientific article published in 2021

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

article

A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy

scientific article published in 2023

A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

scientific article published in 2021

A rust fungal effector binds plant DNA and modulates transcription ⬇️

scientific article published in Scientific Reports

Advances in understanding obligate biotrophy in rust fungi

scientific article published on 05 February 2019

Advancing Knowledge on Biology of Rust Fungi Through Genomics

article by Sébastien Duplessis et al published 2014 in Advances in Botanical Research

Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus

article

Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)

article

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments.

scientific article published on June 2015

Caractérisation par ingénierie génomique des profils d'expression génique de Pisolithus tinctorius et d'Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne

Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

scientific article published on 09 October 2019

Computational Methods for Predicting Effectors in Rust Pathogens

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Developmental cross talking in the ectomycorrhizal symbiosis: signals and communication genes

article

Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology

scientific article published on 23 February 2016

Effector proteins of rust fungi

scientific article published on 20 August 2014

Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome

scientific article

Elevated Ozone Concentration and Nitrogen Addition Increase Poplar Rust Severity by Shifting the Phyllosphere Microbial Community

scientific article published in 2022

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

article

Forest tree genomics: 10 achievements from the past 10 years and future prospects

Gene expression analysis of Populus deltoides roots subjected to copper stress

article

Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3

article

Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor

scientific article published on 28 March 2014

Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

scientific article

Genome-wide identification of NBS resistance genes in Populus trichocarpa

scientific article

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

scientific article

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

scientific article published on 3 December 2015

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies.

scientific article published on 10 February 2016

Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs.

scientific article

Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens

scientific article

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

scientific article published on 28 March 2012

Isolation and Characterization of Differentially Expressed Genes in the Mycelium and Fruit Body of Tuber borchii.

scientific article

Isolation and characterization of differentially expressed genes in the mycelium and fruit body of Tuber borchii

scientific article

Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum

article

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation

scientific article

Living in harmony in the wood underground: ectomycorrhizal genomics

scientific article published on 8 February 2007

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

scientific article published in 2023

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy

scientific article published in July 2011

Mining gene expression data with pattern structures in formal concept analysis

article

Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers

scientific article published on 18 April 2012

More complexity in the mycorrhizal world.

scientific article

Oak genome reveals facets of long lifespan

scientific article published on 18 June 2018

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

On the current status of Phakopsora pachyrhizi genome sequencing

scientific article

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

scientific article published on 14 March 2014

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

scientific article

Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection

scientific article published on 09 December 2009

Phylogenetics and Phylogenomics of Rust Fungi

scientific article

Poplar and Pathogen Interactions: Insights fromPopulusGenome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

article

Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense

scientific article published on 19 February 2004

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

scientific article

RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus

scientific article published on 8 April 2009

RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

scientific article

Rust Effectors

article

Rust fungal effectors mimic host transit peptides to translocate into chloroplasts

scientific article published on October 2015

Secretomic climax in plant-fungal interactions

article

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

scientific article published on 16 June 2015

Show me the way: rust effector targets in heterologous plant systems

scientific article published on 14 February 2018

T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor

scientific article published on May 2008

T-DNA transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus.

scientific article

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

scientific article

The Poplar Rust-Induced Secreted Protein (RISP) Inhibits the Growth of the Leaf Rust Pathogen Melampsora larici-populina and Triggers Cell Culture Alkalinisation.

scientific article published on 17 February 2016

The application of genetic approaches for investigations of mycorrhizal symbioses

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

scientific article

The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1.

scientific article

The poplar-poplar rust interaction: insights from genomics and transcriptomics

scientific article published on 26 October 2011

The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar.

scientific article published on 16 January 2018

Toward the Discovery of Itemsets with Significant Variations in Gene Expression Matrices

article

Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus

article

Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina

scientific article

Transcript profiling reveals novel marker genes involved in fruiting body formation in Tuber borchii

scientific article

Transcriptome Analysis of Apple Leaves Infected by the Rust Fungus Gymnosporangium yamadae at Two Sporulation Stages

scientific article published on 27 January 2020

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

scientific article

Two FCA-Based Methods for Mining Gene Expression Data

article

Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes

article

Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

article

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust

scientific article published on 18 July 2011

List of works by Sébastien Duplessis

12 Rust Fungi: Achievements and Future Challenges on Genomics and Host–Parasite Interactions

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

<b>Two stripe rust effectors impair wheat resistance by suppressing import of host Fe</b>–<b>S protein into chloroplasts</b>

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy

A point mutation and large deletion at the candidate avirulence locus <i>AvrMlp7</i> in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

A rust fungal effector binds plant DNA and modulates transcription ⬇️

Advances in understanding obligate biotrophy in rust fungi

Advancing Knowledge on Biology of Rust Fungi Through Genomics

Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus

Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments.

Caractérisation par ingénierie génomique des profils d'expression génique de Pisolithus tinctorius et d'Eucalyptus globulus au cours du développement de la symbiose ectomycorhizienne

Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

Computational Methods for Predicting Effectors in Rust Pathogens

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Developmental cross talking in the ectomycorrhizal symbiosis: signals and communication genes

Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology

Effector proteins of rust fungi

Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome

Elevated Ozone Concentration and Nitrogen Addition Increase Poplar Rust Severity by Shifting the Phyllosphere Microbial Community

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

Forest tree genomics: 10 achievements from the past 10 years and future prospects

Gene expression analysis of Populus deltoides roots subjected to copper stress

Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3

Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor

Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

Genome-wide identification of NBS resistance genes in Populus trichocarpa

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies.

Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs.

Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

Isolation and Characterization of Differentially Expressed Genes in the Mycelium and Fruit Body of Tuber borchii.

Isolation and characterization of differentially expressed genes in the mycelium and fruit body of Tuber borchii

Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation

Living in harmony in the wood underground: ectomycorrhizal genomics

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy

Mining gene expression data with pattern structures in formal concept analysis

Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers

More complexity in the mycorrhizal world.

Oak genome reveals facets of long lifespan

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

On the current status of Phakopsora pachyrhizi genome sequencing

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection

Phylogenetics and Phylogenomics of Rust Fungi

Poplar and Pathogen Interactions: Insights fromPopulusGenome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

Poplar peroxiredoxin Q. A thioredoxin-linked chloroplast antioxidant functional in pathogen defense

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus

RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

Rust Effectors

Rust fungal effectors mimic host transit peptides to translocate into chloroplasts

Secretomic climax in plant-fungal interactions

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Show me the way: rust effector targets in heterologous plant systems

T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor

T-DNA transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus.

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

The Poplar Rust-Induced Secreted Protein (RISP) Inhibits the Growth of the Leaf Rust Pathogen Melampsora larici-populina and Triggers Cell Culture Alkalinisation.

The application of genetic approaches for investigations of mycorrhizal symbioses

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1.

The poplar-poplar rust interaction: insights from genomics and transcriptomics

The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar.

Toward the Discovery of Itemsets with Significant Variations in Gene Expression Matrices

Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus

Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina

Transcript profiling reveals novel marker genes involved in fruiting body formation in Tuber borchii

Transcriptome Analysis of Apple Leaves Infected by the Rust Fungus Gymnosporangium yamadae at Two Sporulation Stages

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

Two FCA-Based Methods for Mining Gene Expression Data

Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes

Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves