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List of works by Nigel Collier

A Contrastive Framework for Neural Text Generation ⬇️

scientific article published on 13 February 2022

A Framework for Integrating Deep and Shallow Semantic Structures in Text Mining

article published in 2003

A baseline feature set for learning rhetorical zones using full articles in the biomedical domain

A comparison of query translation methods for English-Japanese cross-language information retrieval (poster abstract)

A framework for enhancing spatial and temporal granularity in report-based health surveillance systems

scientific article

A methodology to enhance spatial understanding of disease outbreak events reported in news articles

scientific article published on 13 February 2010

A multilingual ontology for infectious disease surveillance: rationale, design and challenges

scientific article published on 01 January 2006

A partially supervised cross-collection topic model for cross-domain text classification

article

A pragmatic guide to geoparsing evaluation: Toponyms, Named Entity Recognition and pragmatics

scientific article published on 19 September 2019

An Analysis of Twitter Messages in the 2011 Tohoku Earthquake

scholarly article by Son Doan et al published 2012 in Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering

An Empirical Study of Sections in Classifying Disease Outbreak Reports

An experiment in hybrid dictionary and statistical sentence alignment

An experiment in hybrid dictionary and statistical sentence alignment

Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports

scientific article

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

scientific article published on 6 October 2011

Automatic acquisition and classification of terminology using a tagged corpus in the molecular biology domain

scholarly article by Nigel Collier published in January 2001

Automatic classification of verbs in biomedical texts

Automatic concept recognition using the human phenotype ontology reference and test suite corpora

scientific article

Bio-medical entity extraction using Support Vector Machines

Bio-medical entity extraction using support vector machines

scientific article published on February 2005

BioCaster: detecting public health rumors with a Web-based text mining system

scientific article published on 15 October 2008

Building and Using Geospatial Ontology in the BioCaster Surveillance System

Building and Using Geospatial Ontology in the BioCaster Surveillance System

Change-Point Detection in Time-Series Data by Relative Density-Ratio Estimation

Change-point detection in time-series data by relative density-ratio estimation

scientific article

Classifying disease outbreak reports using n-grams and semantic features

scientific article published on 15 May 2009

Comparison between tagged corpora for the named entity task

Comparison between tagged corpora for the named entity task

Comparison of character-level and part of speech features for name recognition in biomedical texts.

scientific article published on December 2004

Concept selection for phenotypes and diseases using learn to rank

scientific article published on June 2015

Content Analysis of Syndromic Twitter Data

scientific article

Content Analysis of Syndromic Twitter Data

scholarly article by Bethany Keffala et al published 23 March 2013 in Online journal of public health informatics

Contrastive Search Is What You Need For Neural Text Generation ⬇️

scientific article published on 25 October 2022

Crowdsourcing Twitter annotations to identify first-hand experiences of prescription drug use.

scientific article published on 7 November 2015

Developing a disease outbreak event corpus

scientific article

Discriminating Rhetorical Analogies in Social Media

scholarly article published 2014

Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6)

scientific article published on 24 June 2020

Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses

scholarly article by Son Doan et al published September 2012 in 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology

Erratum: Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction

scientific article

Evaluation of Epidemic Intelligence Systems Integrated in the Early Alerting and Reporting Project for the Detection of A/H5N1 Influenza Events ⬇️

scientific article published on March 5, 2013

Exploring Predicate-Argument Relations for Named Entity Recognition in the Molecular Biology Domain

scholarly article by Tuangthong Wattarujeekrit published in January 2005

Extracting the names of genes and gene products with a hidden Markov model

article

Factors influencing performance of internet-based biosurveillance systems used in epidemic intelligence for early detection of infectious diseases outbreaks

scientific article

GENI-DB: a database of global events for epidemic intelligence ⬇️

scientific article published on April 15, 2012

Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes

scientific article

Global mapping of infectious disease

scientific article published on 04 February 2013

Improved Semantic Representation for Domain-Specific Entities ⬇️

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining

scientific article published on 27 June 2019

Introduction to the Biomedical Linked Annotation Hackathon (BLAH) 2015 Symposium

scientific article

Introduction to the bio-entity recognition task at JNLPBA

article

Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking

scientific article (publication date: 2013)

Machine translation vs. dictionary term translation

article

Machine translation vs. dictionary term translation

Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification

scholarly article published 2016

Named Entity Recognition in Vietnamese documents

Named entity recognition in Vietnamese using classifier voting

Navigating the Information Storm

scholarly article published 9 November 2010

OMG U got flu? Analysis of shared health messages for bio-surveillance

scientific article (publication date: 6 October 2011)

PASBio: predicate-argument structures for event extraction in molecular biology

scientific article

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

scientific article

Recent advances in natural language processing for biomedical applications

scientific article published on 31 August 2005

Recognition of medication information from discharge summaries using ensembles of classifiers

scientific article

Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction

scientific article

Special issue on bio-ontologies and phenotypes

scientific article

Structuring an event ontology for disease outbreak detection

scientific article

Syndromic Classification of Twitter Messages

scholarly article by Nigel Collier & Son Doan published 2012 in Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering

Synonym set extraction from the biomedical literature by lexical pattern discovery

scientific article (publication date: 24 March 2008)

The GENIA project

The choice of features for classification of verbs in biomedical texts

The digital revolution in phenotyping

scientific article published on 29 September 2015

The impact of near domain transfer on biomedical named entity recognition

The landscape of international event-based biosurveillance

article

The role of roles in classifying annotated biomedical text

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

scientific article published on 12 December 2016

Topic-Based Vietnamese News Document Filtering in the BioCaster Project

Toward knowledge support for analysis and interpretation of complex traits

scientific article (publication date: 2013)

Towards classifying species in systems biology papers using text mining

scientific article

Towards cross-lingual alerting for bursty epidemic events ⬇️

scientific article (publication date: 6 October 2011)

Towards role-based filtering of disease outbreak reports

scientific article published on 31 December 2008

Towards semantic role labeling & IE in the medical literature.

scientific article

Towards the Semantic Interpretation of Personal Health Messages from Social Media

article

TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms, and Their Relations.

scientific article

Uncovering text mining: A survey of current work on web-based epidemic intelligence ⬇️

scientific article published on July 11, 2012

Use of support vector machines in extended named entity recognition

article

Using hedges to enhance a disease outbreak report text mining system

Using silver and semi-gold standard corpora to compare open named entity recognisers

scholarly article published December 2013

Visually Grounded Reasoning across Languages and Cultures ⬇️

scientific article

What's unusual in online disease outbreak news?

scientific article

What’s missing in geographical parsing?

scientific article published on 7 March 2017

Wrestling with biomedical research results: language resources and literature analysis. Introduction

scientific article published in February 2010

Zone analysis in biology articles as a basis for information extraction

scientific article published on 19 August 2005

Zone identification in biology articles as a basis for information extraction

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