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List of works by Andrew J. Page

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions

scientific article published on 11 February 2016

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

Adaptive Scheduling across a Distributed Computation Platform

AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments

scientific article published on 17 July 2020

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

scientific article published on 05 October 2016

Bioinformatics on a Heterogeneous Java Distributed System

Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines

scholarly article by Thomas M. Keane et al published 18 April 2006 in Algorithmica

Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium.

scientific article

Comparison Of Multi-locus Sequence Typing Software For Next Generation Sequencing Data

article published in 2017

CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

scientific article published on 09 February 2021

Dense genomic sampling identifies highways of pneumococcal recombination

scientific article published on 09 February 2014

Distributed Monte Carlo simulation of light transportation in tissue

Dynamic Task Scheduling using Genetic Algorithms for Heterogeneous Distributed Computing

scholarly article

Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins

scientific article published on 20 February 2018

Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen

scientific article

Framework for Task Scheduling in Heterogeneous Distributed Computing Using Genetic Algorithms

article

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL

article

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

scientific article published on 08 February 2022

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

scientific article

Low memory distributed reconstruction of large digital holograms

scientific article

Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.

scientific article published on April 2016

Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa

scientific article published on 22 September 2016

Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system

scientific article

Multilocus sequence typing by blast from de novo assemblies against PubMLST

article

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data.

scientific article

PlasmidTron: assembling the cause of phenotypes from NGS data

Rapid multi-locus sequence typing direct from uncorrected long reads using

scientific article published on 31 July 2018

Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

scientific article

Roary: rapid large-scale prokaryote pan genome analysis

scientific article

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs

scientific article published on 3 May 2017

Scheduling in a dynamic heterogeneous distributed system using estimation error

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

Stability of the Encoding Plasmids and Surface Expression of CS6 Differs in Enterotoxigenic Escherichia coli (ETEC) Encoding Different Heat-Stable (ST) Enterotoxins (STh and STp).

scientific article

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

scientific article published on 21 January 2016

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

scientific article published in Nature Communications

TipToft: detecting plasmids contained in uncorrected long read sequencing data

Twin peaks: The Omicron SARS-CoV-2 BA.1 and BA.2 epidemics in England

scientific article published on 24 May 2022

Using Commodity Graphics Hardware for Real-Time Digital Hologram View-Reconstruction

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