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Authors whose works are in public domain in at least one jurisdiction

List of works by David J. Lynn

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The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

scientific article
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

scientific article
InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

scientific article
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

scientific article
PSICQUIC and PSISCORE: accessing and scoring molecular interactions

scientific article (publication date: 29 June 2011)
Induction of a novel chicken Toll-like receptor following Salmonella enterica serovar Typhimurium infection.

scientific article
The bovine lactation genome: insights into the evolution of mammalian milk

scientific article
The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults

scientific article
Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria

scientific article published in May 2012
Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland

scientific article
Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection

scientific article
Avian beta-defensin nomenclature: a community proposed update

scientific article published on 23 April 2007
Identification of a human neonatal immune-metabolic network associated with bacterial infection

scientific article
Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi

scientific article published on 11 December 2009
Evidence of positively selected sites in mammalian alpha-defensins

scientific article published on 12 February 2004
RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

scientific article
Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

scientific article
In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs)

scientific article published on 01 June 2003
The synthetic form of a novel chicken beta-defensin identified in silico is predominantly active against intestinal pathogens

scientific article published on 3 March 2005
Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma

scientific article published on 27 July 2018
The imprinted retrotransposon-like gene PEG11 (RTL1) is expressed as a full-length protein in skeletal muscle from Callipyge sheep

scientific article
Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology

scientific article published on 18 June 2012
DyNet: visualization and analysis of dynamic molecular interaction networks

scientific article
MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model

scientific article
MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

scientific article
The Role of microRNAs in Bovine Infection and Immunity

scientific article published on November 27, 2014
Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

scientific article published on 19 December 2013
Messenger RNA sequence rather than protein sequence determines the level of self-synthesis and antigen presentation of the EBV-encoded antigen, EBNA1.

scientific article
Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever

scientific article published on 23 May 2016
Discovery of alpha-defensins in basal mammals

scientific article published on 2 March 2007
The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption

scientific article
The miRNAome of the postpartum dairy cow liver in negative energy balance

scientific article
Retinal Pigment Epithelial Cells are a Potential Reservoir for Ebola Virus in the Human Eye.

scientific article
The potential of the microbiota to influence vaccine responses.

scientific article published on September 2017
A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23.

scientific article published on 9 March 2016
A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility

scientific article
Modification of chicken avian beta-defensin-8 at positively selected amino acid sites enhances specific antimicrobial activity.

scientific article published on 5 May 2007
Profiling microRNA expression in bovine alveolar macrophages using RNA-seq

scientific article
Using biological networks to integrate, visualize and analyze genomics data

scientific article
A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

scientific article
Whole blood gene expression profiling of neonates with confirmed bacterial sepsis

scientific article
Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes.

scientific article
HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

scientific article
Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

scientific article published on 19 July 2016
Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis

scientific article published on 19 October 2015
Detecting the effects of selection at the population level in six bovine immune genes

scientific article
Identification of novel response and predictive biomarkers to Hsp90 inhibitors through mass spectrometry-based proteomic profiling of patient-derived prostate tumor explants

scientific article published on 9 April 2018
Contrasting evolution of diversity at two disease-associated chicken genes

scientific article
Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

scientific article

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