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List of works by Nicholas Thomson

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Massive gene decay in the leprosy bacillus

scientific article
The minimum information about a genome sequence (MIGS) specification

scientific article
Genome sequence of Yersinia pestis, the causative agent of plague

scientific article
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

scientific article
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

scientific article
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

scientific article
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

scientific article
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei

scientific article
DNAPlotter: circular and linear interactive genome visualization

scientific article
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

scientific article published in August 2008
Evidence for several waves of global transmission in the seventh cholera pandemic

scientific article
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

scientific article
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

scientific article published on 9 November 2009
Genomics. Genome project standards in a new era of sequencing

scientific article
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

scientific article published on 22 June 2015
Antagonistic coevolution accelerates molecular evolution

scientific article published on 24 February 2010
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

scientific article
Microevolution and history of the plague bacillus, Yersinia pestis

scientific article published on 21 December 2004
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

scientific article published in December 2010
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

scientific article
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

scientific article
The genome of Rhizobium leguminosarum has recognizable core and accessory components

scientific article
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

scientific article published on 11 May 2009
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

scholarly article
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

scientific article published on 17 October 2008
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

scientific journal article
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

scientific article published on 24 October 2008
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129

scientific article
Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

scientific article published on 9 January 2012
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

scientific article
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

scientific article published in September 2012
Genome evolution of Wolbachia strain wPip from the Culex pipiens group

scientific article published on 12 June 2008
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

scientific article
The neglected role of antibody in protection against bacteremia caused by nontyphoidal strains of Salmonella in African children

scientific article
Studying bacterial transcriptomes using RNA-seq

scientific article published on 29 September 2010
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts

scientific article
Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis

scientific article
Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility

scientific article published on 28 March 2008
Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli

scientific article published on September 2006
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081.

scientific article published in December 2006
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes

scientific article published on 22 May 2007
The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

scientific article
Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates

scientific article
A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

scientific article published on 27 August 2010
Biosynthesis of carbapenem antibiotic and prodigiosin pigment in Serratia is under quorum sensing control

scientific article published in May 2000
Patterns of genome evolution that have accompanied host adaptation in Salmonella

scientific article
Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

scientific article published on 20 January 2010
The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number

scientific article
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

scientific article

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