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List of works by Nicholas Thomson

'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution

scientific article published on February 2016

70th Anniversary Collection for the Microbiology Society: Microbial Genomics

scientific article published on 14 December 2015

A Clostridium difficile Lineage Endemic to Costa Rican Hospitals Is Multidrug Resistant by Acquisition of Chromosomal Mutations and Novel Mobile Genetic Elements

scientific article

A bad combination

scientific article published on 01 July 2003

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

scientific article published on 7 November 2006

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

scientific article published on 27 August 2010

A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster

scientific article

A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi

scientific article published on 3 September 2010

A generalized transducing phage for the murine pathogen Citrobacter rodentium

scientific article published in September 2007

A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules

scientific article

A genomic island integrated into recA of Vibrio cholerae contains a divergent recA and provides multi-pathway protection from DNA damage

scientific article

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

scientific article published on 20 February 2015

A pheromone-independent CarR protein controls carbapenem antibiotic synthesis in the opportunistic human pathogen Serratia marcescens.

scientific article

A putative, novel coli surface antigen 8B (CS8B) of enterotoxigenic Escherichia coli

scientific article

A simple method for directional transcriptome sequencing using Illumina technology

scientific article

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

scientific article

A study on the geophylogeny of clinical and environmental Vibrio cholerae in Kenya.

scientific article

All walks of life

scientific article published on 01 April 2003

An O antigen capsule modulates bacterial pathogenesis in Shigella sonnei

scientific article

An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men.

scientific article

An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease

scientific article published on 3 July 2017

Analysis of the role of 13 major fimbrial subunits in colonisation of the chicken intestines by Salmonella enterica serovar Enteritidis reveals a role for a novel locus

scientific article published on 18 December 2008

Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group

scientific article

Annotation of plasmid genes

scientific article published on 29 March 2017

Antagonistic coevolution accelerates molecular evolution

scientific article published on 24 February 2010

Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo

scientific article

Antimicrobial Resistance Diversity Suggestive of Distinct Typhimurium Sources or Selective Pressures in Food-Production Animals

scientific article published on 12 April 2019

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

scientific article published on 11 January 2018

Antimicrobial resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital

Armed to the teeth

scientific article published on 01 April 2002

Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children

scientific article published on 2 August 2017

Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection

scientific article published on 7 November 2014

Bacterial Flagellins: Does Size Matter?

scientific article published on 16 December 2017

Bacterial home from home

scientific article

Biosynthesis of carbapenem antibiotic and prodigiosin pigment in Serratia is under quorum sensing control

scientific article published in May 2000

Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution

scientific article

Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains

scientific article

Brucella neotomae Infection in Humans, Costa Rica

scientific article published on June 2017

Carbapenem antibiotic biosynthesis in Erwinia carotovora is regulated by physiological and genetic factors modulating the quorum sensing-dependent control pathway

scientific article published in January 2005

Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors.

scientific article published on 29 April 2019

Chalk and cheese

scientific article published on 01 July 2004

Character disposition and behavior type: influences of valence on preschool children's social judgments

scientific article published in December 2009

Characterization of a broad-host-range flagellum-dependent phage that mediates high-efficiency generalized transduction in, and between, Serratia and Pantoea

scientific article published on 24 September 2009

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

scientific article published on 10 October 2008

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.

scientific article published on February 2013

Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages.

scientific article published on 25 February 2016

Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates

scientific article

Chlamydia trachomatis: small genome, big challenges

scientific article published on April 2010

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

scientific article published in April 2011

Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis

scientific article published on 10 June 2015

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

scientific article

Collecting and exploiting data to understand a nation’s sexual health needs: Implications for the British National Surveys of Sexual Attitudes and Lifestyles (Natsal)

article

Colonic irritation

scientific article published in December 2006

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

scientific article

Comparative genome analyses of the pathogenic Yersiniae based on the genome sequence of Yersinia enterocolitica strain 8081.

scientific article published on January 2007

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

scientific article

Comparative genomics of Shiga toxin encoding bacteriophages

scientific article

Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction

scientific article published on August 2006

Complete Genome Sequence of the First KPC-Type Carbapenemase-Positive Proteus mirabilis Strain from a Bloodstream Infection

scientific article published on 23 June 2016

Complete Genome Sequences of Two Citrobacter rodentium Bacteriophages, CR8 and CR44b

scientific article

Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

scientific article published on 24 October 2008

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

scientific article published on 20 January 2010

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

scientific article

Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility

scientific article published on 28 March 2008

Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding blaCTX-M-14.

scientific article

Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7.

scientific article

Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

scientific article

Concern regarding the alleged spread of hypervirulent lymphogranuloma venereum Chlamydia trachomatis strain in Europe

scientific article published on April 2017

Correction for Waterfield et al., Rapid Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts

scholarly article

DNAPlotter: circular and linear interactive genome visualization

scientific article

Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh

scientific article published on 25 June 2018

Diagnostics for yaws eradication: insights from direct next generation sequencing of cutaneous strains of Treponema pallidum.

scientific article published on 16 October 2017

Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids.

scientific article

Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria

scientific article published on 31 January 2011

Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi.

scientific article

Directional gene flow and ecological separation in Yersinia enterocolitica

scientific article

Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published on 22 August 2016

Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts

scientific article

Draft Genome Sequence of 24570, the Type Strain of Shigella flexneri

scientific article published on 28 May 2015

Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin

scientific article published in 2022

Draft genome sequences of the type strains of Shigella flexneri held at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome sequence

scientific article

Draft genomes of Shigella strains used by the STOPENTERICS consortium

scientific article

Dynamics of cholera epidemics from Benin to Mauritania

scientific article published on 9 April 2018

Efficient production of active polyhydroxyalkanoate synthase in Escherichia coli by coexpression of molecular chaperones

scientific article published on 18 January 2013

Egg-and-Banana Sign: A Novel Diagnostic CT Marker for Pulmonary Hypertension.

scientific article published on 18 April 2018

Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria

scientific article (publication date: July 2016)

Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.

scientific article

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

scientific article published on 9 November 2009

Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

scientific article published in March 2017

Erwinia carotovora has two KdgR-like proteins belonging to the IciR family of transcriptional regulators: identification and characterization of the RexZ activator and the KdgR repressor of pathogenesis.

scientific article published in July 1999

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

scientific article

European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures

scientific article

Evidence for a lineage of virulent bacteriophages that target Campylobacter

scientific article

Evidence for several waves of global transmission in the seventh cholera pandemic

scientific article

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

scientific article

Evolutionary dynamics of the Yersinia enterocolitica complex

scientific article published on January 2012

Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis

scientific article published on 25 April 2017

Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids

scientific article

Fitting the niche by genomic adaptation

scientific article published in November 2003

GI genomes

scientific article published on 01 May 2005

Galleria mellonella is low cost and suitable surrogate host for studying virulence of human pathogenic Vibrio cholerae

scientific article

Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients

scientific article

Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate

scientific article

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.

scientific article

Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs

scientific article published on 30 April 2020

Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam

scientific article published on August 2015

Genetic flux over time in the Salmonella lineage

scientific article (publication date: 2007)

Genome Sequence of Chlamydia psittaci Strain 01DC12 Originating from Swine

scientific article published on 15 January 2013

Genome Sequence of Klebsiella pneumoniae Ecl8, a Reference Strain for Targeted Genetic Manipulation

scientific article published on 31 January 2013

Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Infantis Strains from Healthy Broiler Chicks in Hungary and in the United Kingdom

scientific article

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar

scientific article published on 27 August 2013

Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen

scientific article published on August 2014

Genome evolution of Wolbachia strain wPip from the Culex pipiens group

scientific article published on 12 June 2008

Genome giants

scientific article published on 01 July 2002

Genome sequence of Yersinia pestis, the causative agent of plague

scientific article

Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes

scientific article published on 22 May 2007

Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

scholarly article

Genome sequence of the zoonotic pathogen Chlamydophila psittaci

scientific article published on 23 December 2010

Genome sequences of Salmonella enterica serovar typhimurium, Choleraesuis, Dublin, and Gallinarum strains of well- defined virulence in food-producing animals

scientific article published on 8 April 2011

Genome watch: Brothers in arms

article published in 2005

Genome-wide profiling of humoral immunity and pathogen genes under selection identifies immune evasion tactics of Chlamydia trachomatis during ocular infection

scientific article published on 29 August 2017

Genome-wide transposon mutagenesis indicates that Mycobacterium marinum customizes its virulence mechanisms for survival and replication in different hosts

scientific article published on 17 February 2015

Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales.

scientific article

Genomic Comparison of the Closely Related Salmonella enterica Serovars Enteritidis and Dublin

scientific article published on 10 February 2012

Genomic Investigations unmask Mycoplasma amphoriforme, a new respiratory pathogen

scientific article

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

scientific article published on 22 June 2015

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

scientific article published on 11 May 2009

Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates

scientific article

Genomic characterisation of Felis catus papillomavirus type 5 with proposed classification within a new papillomavirus genus.

scientific article

Genomic characterisation of invasive non-typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans isolates from Malawi ⬇️

scientific article

Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection

scientific article published in 2021

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

scientific article published on 31 May 2022

Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance.

scientific article

Genomic epidemiology of Vibrio cholerae O1 associated with floods, Pakistan, 2010.

scientific article

Genomic evidence that the live Chlamydia abortus vaccine strain 1B is not attenuated and has the potential to cause disease.

scientific article published in June 2018

Genomic history of the seventh pandemic of cholera in Africa.

scientific article published in November 2017

Genomic insights into the 2016-2017 cholera epidemic in Yemen

scientific article published on 02 January 2019

Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens

scientific article published in Science

Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting

scientific article published on 5 March 2017

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei

scientific article

Genomic variations leading to alterations in cell morphology of Campylobacter spp.

scientific article

Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae

scientific article published on 01 October 2020

Genomics. Genome project standards in a new era of sequencing

scientific article

Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.

scientific article

Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis

scientific article published on 24 November 2021

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

scientific article

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

scientific article published on 11 May 2021

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae

scientific article published on 9 January 2012

High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139

scientific article published on 10 April 2019

Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

scientific article published on 13 April 2018

Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity

scientific article

Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape

scientific article

Identification of Klebsiella capsule synthesis loci from whole genome data

scientific article

Identification of Klebsiella capsule synthesis loci from whole genome data

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

scientific article

Integrated view of Vibrio cholerae in the Americas

scientific article

Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

scientific article published on 27 April 2015

Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan

scientific article published on 24 December 2015

Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins

scientific article

Massive attack

scientific article published on August 2005

Massive gene decay in the leprosy bacillus

scientific article

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop

scientific article published in June 2008

Microbial mariners

scientific article published in 2005

Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel

article

Microevolution and history of the plague bacillus, Yersinia pestis

scientific article published on 21 December 2004

Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing

scientific article

Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution.

scientific article published on 04 February 2016

Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1.

scientific article

Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya

scientific article published on 22 July 2017

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

scientific article published on 29 June 2018

Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi.

scientific article published on 23 March 2007

Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

scientific article published on 28 December 2017

New insights into the bacterial fitness-associated mechanisms revealed by the characterization of large plasmids of an avian pathogenic E. coli

scientific article published on 4 January 2012

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa ⬇️

scientific journal article

Novel R pipeline for analyzing Biolog Phenotypic MicroArray data

scientific article

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

scientific article published on 19 July 2018

Parallel independent evolution of pathogenicity within the genus Yersinia

scientific article

Pathogens in decay

scientific article published in October 2004

Patterns of genome evolution that have accompanied host adaptation in Salmonella

scientific article

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

scientific article published on 11 May 2015

Plasmid CDS5 influences infectivity and virulence in a mouse model of Chlamydia trachomatis urogenital infection

scientific article

Plasmid deficiency in urogenital isolates of Chlamydia trachomatis reduces infectivity and virulence in a mouse model

scientific article

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data.

scientific article

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity.

scientific article published on 26 February 2018

Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates

scientific article published on 23 May 2007

Prospective Surveillance and Rapid Whole-Genome Sequencing Detects Two Unsuspected Outbreaks of Carbapenemase-Producing Klebsiella pneumoniae in a UK Teaching Hospital

scientific article published on 4 October 2017

Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli

scientific article published on September 2006

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

scientific article published on 21 January 2009

Publisher Correction: Genomic insights into the 2016-2017 cholera epidemic in Yemen

scientific article published on 01 February 2019

Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis

scientific article published on 12 February 2016

Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations

scientific article published on 23 December 2015

RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri

scientific article

Rapid Virulence Annotation (RVA): identification of virulence factors using a bacterial genome library and multiple invertebrate hosts

scientific article

Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates

scientific article

Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process

scientific article

Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.

scientific article

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

scientific article

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling ⬇️

scientific article

Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene

scientific article published on 03 August 2016

Salmonella bongori provides insights into the evolution of the Salmonellae

scientific article published in August 2011

Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis

scientific article

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms

scientific article published on 28 December 2012

Sexually transmitted infections and sexual and substance use correlates among young adults in Chiang Mai, Thailand

scientific article published on April 2008

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

scientific article published in September 2012

Shrinking genomics

scientific article published in January 2004

Sibling rivalry.

scientific article

South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study

scientific article

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

scientific article published on 4 August 2015

Spot the difference…

scientific article published on 01 November 2002

Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae

scientific article published on 13 January 2012

Studying bacterial transcriptomes using RNA-seq

scientific article published on 29 September 2010

Tales of the unexpected

scientific article published on 01 June 2002

The Chlamydia muridarum plasmid revisited : new insights into growth kinetics.

scientific article published on 8 March 2018

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

scientific article

The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli

scientific article published on 6 November 2009

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients

scientific article published in April 2009

The Hidden Genomics of Chlamydia trachomatis.

scientific article

The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource

scientific article

The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization

scientific article published on 21 January 2010

The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis

scientific article published on 10 October 2016

The Yersinia pseudotuberculosis complex: characterization and delineation of a new species, Yersinia wautersii

scientific article

The building blocks of pathogenicity

scientific article published on 01 February 2003

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129

scientific article

The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081.

scientific article

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

scientific article

The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics

scientific article published on November 2004

The devil is in the detail

scientific article published on 01 June 2003

The diversity of Klebsiella pneumoniae surface polysaccharides

scientific article published on 25 August 2016

The extant World War 1 dysentery bacillus NCTC1: a genomic analysis

scientific article

The genetic basis of plasmid tropism between Chlamydia trachomatis and Chlamydia muridarum

scientific article published on 08 May 2014

The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients

scientific article published on 17 October 2008

The genome of Rhizobium leguminosarum has recognizable core and accessory components

scientific article

The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number

scientific article

The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

scientific article

The genomic signatures of Shigella evolution, adaptation and geographical spread

scientific article published on 29 February 2016

The genus Serratia revisited by genomics

scientific article published in 2022

The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One

scientific article published on 01 April 2019

The magnificent seven

scientific article published on 01 January 2003

The minimum information about a genome sequence (MIGS) specification

scientific article

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

scientific article

The neglected role of antibody in protection against bacteremia caused by nontyphoidal strains of Salmonella in African children

scientific article

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

scientific article published in August 2008

The population structure of Vibrio cholerae from the Chandigarh Region of Northern India

scientific article (publication date: July 2014)

The role of intra-NAPL diffusion on mass transfer from MGP residuals

scientific article published on 24 April 2018

The role of prophage-like elements in the diversity of Salmonella enterica serovars

scientific article published in May 2004

The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. Circulating in Southern Vietnam

scientific article

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

scientific article

The value of comparison

scientific article published in 2003

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

scientific article

Tracking the establishment of local endemic populations of an emergent enteric pathogen

scientific article published on 30 September 2013

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

scientific article

Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities

scientific article

Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels

scientific article

Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever

scientific article published on 17 November 2008

Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic

scientific article published in 2022

Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014.

scientific article

Vive la différence

scientific article published on 9 June 2008

What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B ⬇️

scientific article

Whole genome analysis to detect potential vaccine-induced changes on Shigella sonnei genome.

scientific article published on 30 April 2015

Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper.

scientific article

Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina

article

Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.

scientific article

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

scientific article

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

scientific article published on 22 March 2013

Whole-genome sequencing of bacterial sexually transmitted infections: implications for clinicians

scientific article published on February 2013

Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel

scientific article published on 27 March 2018

Widespread epidemic cholera caused by a restricted subset of Vibrio cholerae clones.

scientific article

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

scientific article published in December 2010

Young Thai women who use methamphetamine: intersection of sexual partnerships, drug use, and social networks

scientific article published on 11 January 2008

eGenomics: Cataloguing Our Complete Genome Collection III.

scientific article published on 30 April 2007

eGenomics: Cataloguing our Complete Genome Collection

scientific article (publication date: 2005)

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