List of works by Romain Koszul

3D organization of synthetic and scrambled chromosomes.

scientific article published in March 2017

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus

article

A Proximity Ligation-Based Method for Quantitative Measurement of D-Loop Extension in S. cerevisiae

A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae

scientific article

A major role for Eco1 in regulating cohesin-mediated mitotic chromosome folding

A prominent role for segmental duplications in modeling eukaryotic genomes

scientific article published on 02 December 2008

Beyond the bounds of evolution: Synthetic chromosomes… How and what for?

scientific article

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi-C.

scientific article published on 16 July 2018

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

scientific article published on 22 January 2021

Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum

scientific article published on 20 March 2020

Chromosome-level genome assembly of the European green woodpecker <i>Picus viridis</i>

scientific article published in 2024

Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer <i>Adineta vaga</i>

scientific article published on 06 October 2021

Chromosome-scale assemblies of <i>Acanthamoeba castellanii</i> genomes provide insights into <i>Legionella pneumophila</i> infection–related chromatin reorganization

scientific article published in 2022

Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle

scientific article published on 20 July 2017

Computer vision for pattern detection in chromosome contact maps

scientific article published on 16 November 2020

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

scientific article published in August 2015

Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis

scientific article published on 13 June 2019

Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures

scientific article

Csm4, in collaboration with Ndj1, mediates telomere-led chromosome dynamics and recombination during yeast meiosis

scientific article

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

scientific article published on March 2017

Dynamic Processing of Displacement Loops During Recombinational DNA Repair

article published in 2018

Dynamic Processing of Displacement Loops during Recombinational DNA Repair

scientific article published on 05 February 2019

Dynamic chromosome movements during meiosis: a way to eliminate unwanted connections?

scientific article

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

scientific article

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

scientific article published on 13 January 2016

FACT mediates cohesin function on chromatin

scientific article published on 03 October 2019

Filling annotation gaps in yeast genomes using genome-wide contact maps

scientific article

Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution

scientific article published on 21 August 2015

Gateway to genetic exchange? DNA double-strand breaks in the bdelloid rotifer Adineta vaga submitted to desiccation

scientific article

Generation and Analysis of Chromosomal Contact Maps of Bacteria

scientific article

Generation and Analysis of Chromosomal Contact Maps of Yeast Species

scientific article published on January 2016

Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota

scientific article published on 18 September 2018

Genome evolution in yeasts

scientific article

Genome-wide replication landscape of Candida glabrata

scientific article published on 2 September 2015

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

scientific article

High-quality genome (re)assembly using chromosomal contact data

scientific article

Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

scientific article published in Physical Review Letters

Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae

scientific article

Meiotic chromosomes move by linkage to dynamic actin cables with transduction of force through the nuclear envelope

scientific article published on June 2008

MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries

scientific article published on 20 August 2019

Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data

scientific article

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms

scientific article

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.

scientific article published on 10 January 2018

Normalization of a chromosomal contact map.

scientific article

Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

scientific article

Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure

scientific article published on 26 March 2014

Real-time imaging of meiotic chromosomes in Saccharomyces cerevisiae

scientific article published on January 2009

Regulation of Cohesin-Mediated Chromosome Folding by Eco1 and Other Partners

scientific article published on 06 February 2020

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay

scientific article published on 17 February 2017

Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms

scientific article

Spatial reorganization of telomeres in long-lived quiescent cells

scientific article

Stability of large segmental duplications in the yeast genome

scientific article

Synthetic chromosome fusion: effects on genome structure and function

The 3D folding of metazoan genomes correlates with the association of similar repetitive elements

scientific article published on 24 November 2015

The centenary of Janssens's chiasmatype theory

scientific article

The chiasmatype theory. A new interpretation of the maturation divisions. 1909.

scientific article

The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata

scientific article published on January 2003

Total synthesis of a functional designer eukaryotic chromosome.

scientific article

Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

scientific article published in Nature Communications

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

scientific article published on 18 June 2020

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