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List of works by Giovanni Stracquadanio

"Perfect" designer chromosome V and behavior of a ring derivative

scientific article

A Design-for-Yield Algorithm to Assess and Improve the Structural and Energetic Robustness of Proteins and Drugs

article by Giuseppe Nicosia & Giovanni Stracquadanio published 2009 in Lecture Notes in Computer Science

A Mesh Adaptive Basin Hopping Method for the Design of Circular Antenna Arrays

An Advanced Clonal Selection Algorithm with Ad-Hoc Network-Based Hypermutation Operators for Synthesis of Topology and Sizing of Analog Electrical Circuits

An Immunological Algorithm for Doping Profile Optimization in Semiconductors Design

An Information-Theoretic Approach for Clonal Selection Algorithms

scientific article published in 2010

Analysis and Optimization of C3 Photosynthetic Carbon Metabolism

scholarly article published 2010

Automatic Tuning of Algorithms Through Sensitivity Minimization

BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts

scientific article published on 14 November 2015

Bose–Einstein condensation in satisfiability problems

Bug mapping and fitness testing of chemically synthesized chromosome X.

scientific article

CD44 SNPrs187115: A Novel Biomarker Signature that Predicts Survival in Resectable Pancreatic Ductal Adenocarcinoma

scientific article published on 9 June 2016

Computational energy-based redesign of robust proteins

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

scientific article published on March 2017

Design of a synthetic yeast genome.

scientific article

Designing Groundwater Supply Systems Using the Mesh Adaptive Basin Hopping Algorithm

Doping profile optimization in semiconductor design

Effective design of semiconductor devices using evolutionary-based derivative free optimization

Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis

scientific article

Entropic divergence for population based optimization algorithms

scientific article published in July 2010

Generalized pattern search algorithm for Peptide structure prediction

scientific article published on 16 May 2008

Identification of sensitive enzymes in the photosynthetic carbon metabolism.

scientific article published in January 2012

Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes

scientific article

Large Scale Agent-Based Modeling of the Humoral and Cellular Immune Response

scientific article published in 2011

Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae

scientific article

Multi-objective optimization of doping profile in semiconductor design

New coupled EM and circuit simulation flow for integrated spiral inductor by introducing symbolic simplified expressions

Nominal-Yield-Area Tradeoff in Automatic Synthesis of Analog Circuits: A Genetic Programming Approach Using Immune-Inspired Operators

article published in 2009

Packing equal disks in a unit square: an immunological optimization approach

scholarly article published July 2015

PyGNA: a unified framework for geneset network analysis

scientific article published on 22 October 2020

RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae.

scientific article published on 4 June 2014

Robust Bio-active Peptide Prediction Using Multi-objective Optimization

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

scientific article

Semiconductor device design using the BiMADS algorithm

Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond.

scientific article

The importance of p53 pathway genetics in inherited and somatic cancer genomes.

scientific article published on March 2016

Total synthesis of a functional designer eukaryotic chromosome.

scientific article

Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units

scientific article published on 23 March 2015