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List of works by Jonathan Cairns

BayesPeak--an R package for analysing ChIP-seq data

scientific article

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

scientific article

Chicdiff: a computational pipeline for detecting differential chromosomal interactions in Capture Hi-C data

scientific article published on 01 November 2019

Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

scientific article published on May 2017

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells.

scientific article published on 23 March 2017

Integrated in vitro models for hepatic safety and metabolism: evaluation of a human Liver-Chip and liver spheroid

scientific article published on 26 March 2019

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

scientific article

Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.

scientific article published on 14 August 2017

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition.

scientific article published in March 2018

Optimizing the design of population-based patient-derived tumor xenograft studies to better predict clinical response

scientific article published on 31 October 2018

Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53

scientific article

Platelet function is modified by common sequence variation in megakaryocyte super enhancers

scientific article

Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data

scientific article

RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus

scientific article published on 01 July 2019

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