Search filters

List of works by Nikolay Kolchanov

A compilation of composite regulatory elements affecting gene transcription in vertebrates

scientific article

A computational-experimental approach to designing a polyfunctional genosensor derived from the Escherichia coli gene yfiA promoter.

scientific article published in November 2007

A new stochastic model for subgenomic hepatitis C virus replication considers drug resistant mutants

scientific article (publication date: 2014)

A novel nuclear marker, Pm-int9, for phylogenetic studies of Opisthorchis felineus, Opisthorchis viverrini, and Clonorchis sinensis (Opisthorchiidae, Trematoda).

scientific article published on 24 September 2009

A plausible mechanism for auxin patterning along the developing root.

scientific article

A simple method for the calculation of low energy packings of alpha-helices--a threshold approximation. I. The use of the method to estimate the effects of amino acid substitutions, deletions and insertions in globins

scientific article published in September 1984

A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism

article

A strategy to eradicate well-developed Krebs-2 ascites in mice

scientific article published on 10 February 2016

ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology

scientific article published on 15 April 2015

ANDVisio: a new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem.

scientific article published on January 2011

ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters

scientific article

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site

scientific article

Abundances of microRNAs in human cells can be estimated as a function of the abundances of YRHB and RHHK tetranucleotides in these microRNAs as an ill-posed inverse problem solution

scientific article

Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides

scientific article

Adaptive evolution of genes of archaea belonging to the genus Pyrococcus associated with adaptation to life under high-pressure conditions

article

An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding protein

scientific article

Analysis of the factors and implications of an empirical method for estimating the stability of mutant human haemoglobins

article

Apoptosis gene network: description in the GeneNet and TRRD databases

scientific article

Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study.

scientific article published on 27 January 2016

Bioinformatical and experimental approaches to investigation of transcription factor binding sites in vertebrate genes

scientific article

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

scientific article

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

scientific article

Candidate SNP Markers of Gender-Biased Autoimmune Complications of Monogenic Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters

scientific article published on 4 April 2016

Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application

scientific article

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.

scientific article published on 12 July 2007

Combined in silico/in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance.

scientific article

Computer analysis of metagenomic data--prediction of quantitative value of specific activity of proteins.

scientific article

Conformational changes in the globin family during evolution

scientific article published on 01 January 1984

Contextual DNA features significant for the DNA damage by the 193-nm ultraviolet laser beam.

scientific article

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL

scientific article published in January 1998

Development of computational methods to search for FoxA transcription factor binding sites, their experimental verification and application to the analysis of ChIP-seq data.

scientific article

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

scientific article

Erratum to: Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study.

scientific article published on 14 April 2016

Expression and molecular characterization of the Mycobacterium tuberculosis PII protein

scientific journal article

Extraction of quantitative characteristics describing wheat leaf pubescence with a novel image-processing technique

scientific article published on 19 September 2012

GeneNet in 2005

scientific article

GeneNet: a gene network database and its automated visualization ⬇️

scientific article published on January 1, 1998

Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset

scientific article published on 24 March 2014

Genome analysis identifies the mutant genes for common industrial Silverblue and Hedlund white coat colours in American mink

article

HOW MULTIPLE AUXIN RESPONSIVE ELEMENTS MAY INTERACT IN PLANT PROMOTERS: A REVERSE PROBLEM SOLUTION

article

How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in Affinity of the TATA-Binding Protein for This Promoter

scientific article published on 4 October 2015

Human Genes Encoding Transcription Factors and Chromatin-Modifying Proteins Have Low Levels of Promoter Polymorphism: A Study of 1000 Genomes Project Data

scientific article

Important role of hydrophobic interactions in high-pressure adaptation of proteins

scientific article published on 01 May 2011

Insights into pathophysiology of dystropy through the analysis of gene networks: an example of bronchial asthma and tuberculosis.

scientific article published on 24 June 2014

Interrelations between the efficiency of translation start sites and other sequence features of yeast mRNAs

scientific article published on 08 November 2003

Introductory note for BGRS\SB-2014 special issue

scientific article published on 01 February 2015

Model of structuring the stem cell niche in shoot apical meristem of Arabidopsis thaliana

scientific article

Modeling evolution of spatially distributed bacterial communities: a simulation with the haploid evolutionary constructor

scientific article published on 2 February 2015

Molecular analysis of the benthos microbial community in Zavarzin thermal spring (Uzon Caldera, Kamchatka, Russia)

scientific article

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome).

scientific article published on 15 April 2015

Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species

scientific article

Molecular evolution of cyclin proteins in animals and fungi ⬇️

scientific article

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions

scientific article

NPRD: Nucleosome Positioning Region Database

scientific article

Nasal aerodynamics protects brain and lung from inhaled dust in subterranean diggers, Ellobius talpinus.

scientific article published in October 2014

Neurometabolic Effect of Altaian Fungus Ganoderma lucidum (Reishi Mushroom) in Rats Under Moderate Alcohol Consumption

scientific article

No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation

scientific article

Novel genes identified by manual annotation and microarray expression analysis in the pancreas

article

Obesity-related known and candidate SNP markers can significantly change affinity of TATA-binding protein for human gene promoters

scientific article published on 16 December 2015

PDBSite: a database of the 3D structure of protein functional sites

scientific article

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.

scientific article published on July 2004

Pecularities of immunoglobulin gene structures as a basis for somatic mutation emergence

article

Permanent proteins in the urine of healthy humans during the Mars-500 experiment.

scientific article published on 08 January 2015

Pluripotency gene network dynamics: System views from parametric analysis

scientific article published on 29 March 2018

Point mutations within 663-666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site.

scientific article

Prediction of tissue-specific effects of gene knockout on apoptosis in different anatomical structures of human brain.

scientific article published on 16 December 2015

Properties of internalization factors contributing to the uptake of extracellular DNA into tumor-initiating stem cells of mouse Krebs-2 cell line.

scientific article published on 25 May 2016

Protein Structure Discovery: software package to perform computational proteomics tasks

scientific article

Recognition of interferon-inducible sites, promoters, and enhancers

scientific article

Regulatory transcription codes in eukaryotic genomes

scientific article

SNPs in the HIV-1 TATA box and the AIDS pandemic

scientific article

Search for new binding sites for the transcriptional factor SF-1 by the SITECON method: experimental verification and analysis of regulatory regions of orthologous genes.

scientific article published on July 2007

Single amino acid substitutions producing instability of globular proteins. Calculation of their frequencies in the entire mutational spectra of the α- and β-subunits of human hemoglobin

scientific article published on 01 January 1988

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes

scientific article

Somatic hypermutagenesis in immunoglobulin genes. II. Influence of neighbouring base sequences on mutagenesis

scientific article published in November 1992

Somatic hypermutagenesis in immunoglobulin genes. III. Somatic mutations in the chicken light chain locus

article

Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor).

scientific article published in July 2010

Studying the non-thermal effects of terahertz radiation on E. coli/pKatG-GFP biosensor cells.

scientific article

Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets

scientific article

TATA box polymorphisms in human gene promoters and associated hereditary pathologies.

scientific article published on February 2009

TNF-Binding domain of the variola virus CrmB protein synthesized in Escherichia coli cells effectively interacts with human TNF.

scientific article published on May 2015

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

scientific article published on January 1997

The abundance of microRNA in Arabidopsis thaliana correlates with the presence of tetranucleotides WRHW and DRYD in their sequences

scientific article published on 01 May 2008

The complete mitochondrial genomes of the liver flukes Opisthorchis felineus and Clonorchis sinensis (Trematoda).

scientific article published on 10 November 2009

The effects of mutations, deletions and insertions of single amino acids on the three-dimensional structure of globins

scientific article published on 01 September 1983

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain

scientific article

The evolution of key cell cycle proteins correlates with an increase in the complexity of eukaryotic organisms

scientific article published on 01 May 2009

The mechanism by which TATA-box polymorphisms associated with human hereditary diseases influence interactions with the TATA-binding protein.

scientific article

The role of alternative translation start sites in the generation of human protein diversity

scientific article published on 15 June 2005

The substitutions G245C and G245D in the Zn(2+)-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain

scientific article published on 18 July 2012

The template RNAs of RNA polymerases can have compact secondary structure, formed by long double helices with partial violations of the complementarity

scientific article published on 01 January 1984

Time-course human urine proteomics in space-flight simulation experiments.

scientific article

Translation efficiency in yeasts correlates with nucleosome formation in promoters

scientific article published on 18 July 2012

WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families

scientific article

uORFs, reinitiation and alternative translation start sites in human mRNAs

scientific article published on 20 March 2008

Paulina is supported by:

About Paulina

Help