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List of works by Nuno F. Azevedo

A comprehensive model for the diffusion and hybridization processes of nucleic acid probes in fluorescence in situ hybridization

scientific article published on 02 July 2020

A new colorimetric peptide nucleic acid-based assay for the specific detection of bacteria.

scientific article published on January 2014

Adhesion of water stressed Helicobacter pylori to abiotic surfaces.

scientific article published in September 2006

Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans

scientific article published on 08 March 2018

Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.

scientific article

An harmonised vocabulary for communicating and interchanging biofilms experimental results.

scientific article published on 23 October 2014

Anti-miRNA oligonucleotides: A comprehensive guide for design

scientific article published on 23 March 2018

Antibiotic resistance of mixed biofilms in cystic fibrosis: impact of emerging microorganisms on treatment of infection.

scientific article published on 4 July 2012

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

scientific article published on 02 March 2019

Application of flow cytometry for the identification of Staphylococcus epidermidis by peptide nucleic acid fluorescence in situ hybridization (PNA FISH) in blood samples

scientific article published on 03 June 2011

Application of locked nucleic acid-based probes in fluorescence in situ hybridization

scientific article published on 12 March 2016

Applications of optical DNA mapping in microbiology.

scientific article published on June 2017

Bioaccumulation of amylose-like glycans by Helicobacter pylori.

scientific article

BiofOmics: a Web platform for the systematic and standardized collection of high-throughput biofilm data

scientific article

Biofilm formation with mixed cultures of Pseudomonas aeruginosa/Escherichia coli on silicone using artificial urine to mimic urinary catheters

scientific article

Coccoid form of Helicobacter pylori as a morphological manifestation of cell adaptation to the environment

scientific article published on 30 March 2007

Computational resources and strategies to construct single-molecule metabolic models of microbial cells

scientific article

Correction: Influence of the fixation/permeabilization step on peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) for the detection of bacteria

scientific article published in PLoS ONE

Critical review on biofilm methods.

scientific article published on 21 November 2016

DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH).

scientific article published on 20 October 2008

Detection and discrimination of biofilm populations using locked nucleic acid/2′-O-methyl-RNA fluorescence in situ hybridization (LNA/2′OMe-FISH)

scholarly article by Andreia S M Azevedo et al published December 2015 in Biochemical Engineering Journal

Detection of Dehalococcoides spp. by peptide nucleic acid fluorescent in situ hybridization

scientific article published on 26 June 2014

Detection of Helicobacter pylori in the Gastric Mucosa by Fluorescence In Vivo Hybridization.

scientific article published on January 2017

Detection of Microorganisms by Fluorescence In Situ Hybridization Using Peptide Nucleic Acid

scientific article published on 01 January 2020

Detection of Salmonella enterica serovar Enteritidis using real time PCR, immunocapture assay, PNA FISH and standard culture methods in different types of food samples.

scientific article

Developing a model for cystic fibrosis sociomicrobiology based on antibiotic and environmental stress

scientific article published on 28 September 2017

Development and application of Peptide Nucleic Acid Fluorescence in situ Hybridization for the specific detection of Listeria monocytogenes

scientific article published on 15 December 2018

Development and application of a novel peptide nucleic acid probe for the specific detection of Helicobacter pylori in gastric biopsy specimens

scientific article

Discriminating multi-species populations in biofilms with peptide nucleic acid fluorescence in situ hybridization (PNA FISH) ⬇️

scientific article

Discriminating typical and atypical cystic fibrosis-related bacteria by multiplex PNA-FISH.

scientific article published on 29 August 2016

Discrimination of bacteriophage infected cells using locked nucleic acid fluorescent in situ hybridization (LNA-FISH).

scientific article published on February 2016

Drinking water biofilm assessment of total and culturable bacteria under different operating conditions.

scientific article

Eco-friendly non-biocide-release coatings for marine biofouling prevention

scientific article published on 02 October 2018

Effect of Native Gastric Mucus on in vivo Hybridization Therapies Directed at Helicobacter pylori

scientific article

Effect of chlorine on incorporation of Helicobacter pylori into drinking water biofilms.

scientific article published on 4 December 2009

Emergent bacteria in cystic fibrosis: in vitro biofilm formation and resilience under variable oxygen conditions.

scientific article

Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.

scientific article

Environmental factors influencing molinate biodegradation by a two-member mixed culture in rice paddy field floodwater

article

Erratum to: mismatch discrimination in fluorescent in situ hybridization using different types of nucleic acids.

scientific article published in May 2015

Establishment of a continuous model system to study Helicobacter pylori survival in potable water biofilms ⬇️

scientific article published on 01 January 2003

FISH and chips: a review of microfluidic platforms for FISH analysis

scientific article published on 21 January 2020

Fluorescence In Vivo Hybridization (FIVH) for Detection of Helicobacter pylori Infection in a C57BL/6 Mouse Model

scientific article published on 5 February 2016

Fluorescence in situ Hybridization method using Peptide Nucleic Acid probes for rapid detection of Lactobacillus and Gardnerella spp.

scientific article

Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Lactobacillus spp. in milk samples.

scientific article published on 9 January 2013

Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples

scientific article

Hybridization-based detection of Helicobacter pylori at human body temperature using advanced locked nucleic acid (LNA) probes

scientific article

Identification of cell-surface mannans in a virulent Helicobacter pylori strain

scientific article published on 16 February 2010

Influence of the fixation/permeabilization step on peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) for the detection of bacteria.

scientific article published on 31 May 2018

Interaction of Legionella pneumophila and Helicobacter pylori with bacterial species isolated from drinking water biofilms

scientific article

Intracellular delivery of oligonucleotides in Helicobacter pylori by fusogenic liposomes in the presence of gastric mucus.

scientific article

It is all about location: how to pinpoint microorganisms and their functions in multispecies biofilms

scientific article

Microbiome in cystic fibrosis: Shaping polymicrobial interactions for advances in antibiotic therapy.

scientific article

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces

scientific article

Morphological transition of Helicobacter pylori adapted to water.

scientific article published on 7 September 2017

Nanomaterials and molecular transporters to overcome the bacterial envelope barrier: Towards advanced delivery of antibiotics

scientific article published on 14 December 2017

Optimization of a peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) method for the detection of bacteria and disclosure of a formamide effect

scientific article published on 14 July 2014

Optimization of peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) for the detection of bacteria: The effect of pH, dextran sulfate and probe concentration.

scientific article published on 25 March 2016

PNA-FISH as a new diagnostic method for the determination of clarithromycin resistance of Helicobacter pylori

scientific article

Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy

scientific article

Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models.

scientific article

Propidium iodide staining underestimates viability of adherent bacterial cells

scientific article published on 24 April 2019

Proposal for a method to estimate nutrient shock effects in bacteria

scientific article

Quantitative assessment of individual populations within polymicrobial biofilms.

scientific article

Rapid detection of urinary tract infections caused by Proteus spp. using PNA-FISH.

scientific article published on 4 January 2013

Relationship between invasion of the periodontium by periodontal pathogens and periodontal disease: a systematic review.

scientific article

Single Molecule Simulation of Diffusion and Enzyme Kinetics.

scientific article published on 6 April 2016

Surface Modifications For Antimicrobial Effects in the Healthcare Setting: A Critical Overview

scientific article published in February 2018

Survival of gastric and enterohepatic Helicobacter spp. in water: implications for transmission.

scientific article published in February 2008

Targeting miR-9 in gastric cancer cells using locked nucleic acid oligonucleotides.

scientific article

Techniques to Assess Phage-Biofilm Interaction

scientific article published on 01 January 2019

The cystic fibrosis microbiome in an ecological perspective and its impact in antibiotic therapy

scientific article published on 5 December 2015

The epidemiology of Helicobacter pylori and public health implications

scientific article published in September 2009

Time to "go large" on biofilm research: advantages of an omics approach.

scientific article published on 31 December 2008

Towards Fluorescence In Vivo Hybridization (FIVH) Detection of H. pylori in Gastric Mucosa Using Advanced LNA Probes

scientific article published on 27 April 2015

Validation of Biomode S.A. Probe4CronobacterTM for the Identification of Cronobacter spp

scientific article published on 20 November 2018

Validation of SYTO 9/propidium iodide uptake for rapid detection of viable but noncultivable Legionella pneumophila.

scientific article published on 29 November 2008

Validation of a fluorescence in situ hybridization method using peptide nucleic acid probes for detection of Helicobacter pylori clarithromycin resistance in gastric biopsy specimens

scientific article published on 17 April 2013

Water-induced modulation of Helicobacter pylori virulence properties.

scientific article published on July 2014

Yeasts identification in microfluidic devices using peptide nucleic acid fluorescence in situ hybridization (PNA-FISH).

scientific article published in March 2017

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