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List of works by Céline Hernandez

A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor

scientific article (publication date: 2013)

Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.

scientific article published on 20 December 2010

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

scientific article published on 26 February 2015

Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation

scientific article published on 16 April 2019

Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes

scientific article published on January 2014

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo

scientific article published on 09 December 2020

Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy

scientific article (publication date: 2013)

Early activation of the fatty acid metabolism pathway by chronic high glucose exposure in rat insulin secretory beta-cells

scientific article published on January 2010

ExPASy: SIB bioinformatics resource portal

scientific article published on 31 May 2012

Genetic Network Analyzer: qualitative simulation of genetic regulatory networks.

scientific article published in February 2003

Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation

scientific article published on 13 February 2016

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

scientific article published on 27 July 2017

Labeling of Bifidobacterium longum cells with 13C-substituted leucine for quantitative proteomic analyses

scientific article

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0.

scientific article

PICarver: a software tool and strategy for peptides isoelectric focusing

scientific article published on 11 September 2008

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

scientific article published on 06 July 2018

Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection

scientific article published in Scientific Reports

Qualitative simulation of genetic regulatory networks using piecewise-linear models.

scientific article

Qualitative simulation of the initiation of sporulation in Bacillus subtilis

scientific article published in March 2004

Quantitative proteomics identifies the membrane-associated peroxidase GPx8 as a cellular substrate of the hepatitis C virus NS3-4A protease

scientific article published on 18 December 2013

RSAT 2015: Regulatory Sequence Analysis Tools.

scientific article published on 22 April 2015

Shotgun ecotoxicoproteomics of Daphnia pulex: biochemical effects of the anticancer drug tamoxifen

scientific article

SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid

scientific article published in May 2009

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.

scientific article

swissPIT: a novel approach for pipelined analysis of mass spectrometry data

scientific article

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