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List of works by Sarah A Woodson

A highly sensitive probe for guanine N7 in folded structures of RNA: application to tRNAPhe and Tetrahymena group I intron

scientific article published on 01 August 1993

A metastable rRNA junction essential for bacterial 30S biogenesis.

scientific article

A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly

scientific article published on 03 February 2009

A newborn RNA switches its fate

scientific article published on 01 November 2019

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

scientific article published on 9 August 2017

Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing

scientific article

Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA.

scientific article

An improved surface passivation method for single-molecule studies

scientific article

Analysis of RNA Folding by Native Polyacrylamide Gel Electrophoresis

article

Analysis of Rate-Determining Conformational Changes during Self-Splicing of theTetrahymenaIntron†

article

Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA.

scientific article

Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria

scientific article published on 2 April 2016

Assembly line inspection

scientific article published in Nature

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

scientific article

Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations

scientific article

Association of a group I intron with its splice junction in 50S ribosomes: implications for intron toxicity.

scientific article published in September 1997

Biopolymers celebrates 50 years of nucleic acids research

scientific article published in December 2013

C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.

scientific article published on 28 September 2016

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.

scientific article

Charge density of divalent metal cations determines RNA stability

scientific article published on 13 February 2007

Charge screening in RNA: an integral route for dynamical enhancements

scientific article published on 2 October 2015

Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

scientific article

Compact intermediates in RNA folding.

scientific article published on January 2010

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

scientific article published in February 2004

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

scientific article published on 10 September 2008

Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

scientific article published in 1989

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

scientific article published on 14 June 2013

Cooperative tertiary interaction network guides RNA folding.

scientific article

Counterion Charge Density Determines the Position and Plasticity of RNA Folding Transition States

scientific article published on 30 March 2006

Crowders perturb the entropy of RNA energy landscapes to favor folding

scientific article published on July 2013

Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

scientific article

DNA sequence specificity of mitomycin cross-linking

scientific article published on 01 May 1989

Destabilizing effect of an rRNA stem-loop on an attenuator hairpin in the 5' exon of the Tetrahymena pre-rRNA.

scientific article published in August 1998

Differential effects of ribosomal proteins and Mg2+ ions on a conformational switch during 30S ribosome 5'-domain assembly

scientific article

Distribution of rRNA introns in the three-dimensional structure of the ribosome.

scientific article published in October 2002

Dynamic Transition in tRNA is Solvent Induced

article

Dynamics of biological macromolecules: not a simple slaving by hydration water.

scientific article

Dynamics of tRNA at different levels of hydration.

scientific article published on April 2009

Effect of salt and RNA structure on annealing and strand displacement by Hfq.

scientific article published on 11 August 2009

Effect of transcription on folding of the Tetrahymena ribozyme

scientific article published in June 2003

Enhanced self-splicing of Physarum polycephalum intron 3 by a second group I intron.

scientific article published in April 1995

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

scientific article published on 04 July 2016

Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes.

scientific article published on 8 September 2017

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’

article

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

scientific article published on August 1992

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

scientific article

Fluorescence reporters for Hfq oligomerization and RNA annealing

scientific article published on January 2015

Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain†

scientific article published on 01 September 2000

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

Folding of RNA involves parallel pathways

Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size

scientific article published in July 2004

Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures

scientific article

Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20.

scientific article published on 16 July 2009

Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing

scientific article published on 10 February 2012

Hfq chaperone brings speed dating to bacterial sRNA

scholarly article by Andrew Santiago-Frangos published in July 2018

Hfq proximity and orientation controls RNA annealing

scientific article

Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation

scientific article

In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates.

scientific article published on 24 October 2013

Increased ribozyme activity in crowded solutions

scientific article published on 11 December 2013

Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo ⬇️

scientific article published on March 3, 1998

Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

scientific article

Ironing out the kinks: splicing and translation in bacteria ⬇️

scientific article published on May 1, 1998

Light-Triggered RNA Annealing by an RNA Chaperone

scientific article published on 8 May 2015

Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space

scientific article published on 19 May 2020

Loop dependence of the stability and dynamics of nucleic acid hairpins

scientific article

Macromolecular complexes: how RNA and protein get together.

scientific article published on January 1996

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

scientific article published on May 1999

Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.

scientific article published on 24 June 2011

Maximizing RNA folding rates: a balancing act.

scientific article

Metal ion dependence of cooperative collapse transitions in RNA

scientific article published on 25 August 2009

Metal ions and RNA folding: a highly charged topic with a dynamic future

scientific article

Metals induce transient folding and activation of the twister ribozyme

scientific article published on 21 August 2017

Molecular beacons as probes of RNA unfolding under native conditions

scientific article

Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme

scientific article

Molecular crowding stabilizes folded RNA structure by the excluded volume effect

scientific article

Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering

scientific article

New era of molecular structure and dynamics from solution scattering experiments ⬇️

scientific article published on August 1, 2011

Persistence Length Changes Dramatically as RNA Folds

scientific article published in Physical Review Letters

Perturbed folding kinetics of circularly permuted RNAs with altered topology.

scientific article published in April 2003

Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq.

scientific article

Positive regulation by small RNAs and the role of Hfq

scientific article

Preface. Structures of Large RNA Molecules and Their Complexes.

scientific article published in January 2015

Preferential location of bulged guanosine internal to a G.cntdot.C tract by proton NMR

scientific article published on 01 January 1988

Probing RNA Folding Pathways by RNA Fingerprinting

scientific article published on 18 September 2017

Probing RNA folding pathways by RNA fingerprinting.

scientific article published on May 2001

Probing the structure of ribosome assembly intermediates in vivo using DMS and hydroxyl radical footprinting

scientific article published on 22 March 2016

Protein-guided RNA dynamics during early ribosome assembly.

scientific article published on 12 February 2014

Protein-independent Folding Pathway of the 16S rRNA 5′ Domain

scientific article published on 01 August 2005

Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence

scientific article published on 01 February 1987

RNA Folding Pathways and the Self-Assembly of Ribosomes ⬇️

scientific article published on June 29, 2011

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

scientific article published in Science

RNA folding and ribosome assembly

scientific article published on 18 October 2008

RNA folding retrospective: lessons from ribozymes big and small

scientific article published in April 2015

RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme

scientific article

RNase footprinting of protein binding sites on an mRNA target of small RNAs

scientific article

Rapid binding and release of Hfq from ternary complexes during RNA annealing

scientific article

RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance

scientific article published on 01 January 2020

Refolding of rRNA exons enhances dissociation of the Tetrahymena intron

scientific article

Rendering RNA in 3D

scientific article published on 30 May 2012

Requirements for self-splicing of a group I intron from Physarum polycephalum

scientific article published on October 1994

Reverse splicing of the Tetrahymena IVS: evidence for multiple reaction sites in the 23S rRNA.

scientific article

Ribosomes clear the way for siRNA targeting

scientific article published on 19 August 2020

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics

scientific article published in May 2001

S16 throws a conformational switch during assembly of 30S 5' domain

scientific article published on 3 April 2009

Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast

scientific article

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

scientific article published on 01 December 1993

Slow formation of stable complexes during coincubation of minimal rRNA and ribosomal protein S4

scientific article

Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly

scientific article published on 21 February 2013

Structural Requirement for Mg2+ Binding in the Group I Intron Core

scientific article published on 01 May 2003

Structural analysis of RNA in living cells by in vivo synchrotron X-ray footprinting

scientific article

Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization

article

Structural model of an mRNA in complex with the bacterial chaperone Hfq.

scientific article

Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme

scientific article published on 6 January 2009

Structure and assembly of group I introns

scientific article

Structure and dynamics of ribosomal RNA.

scientific article published in June 1998

Taming free energy landscapes with RNA chaperones

scientific article

Tertiary interactions determine the accuracy of RNA folding

scientific article published on 8 January 2008

The dynamics of unfolded versus folded tRNA: the role of electrostatic interactions.

scientific article

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

scientific article

Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

scientific article

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

scientific article published on 01 January 1998

[22] Time-resolved synchrotron X-ray footprinting and its application to RNA folding

scientific article published on 01 January 2000

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