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List of works by Francesca D Ciccarelli

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

scientific article
SMART 4.0: towards genomic data integration

scientific article (publication date: 2004)
Recent improvements to the SMART domain-based sequence annotation resource

scientific article published on January 1, 2002
Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways

scientific article
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

scientific article published on March 2013
Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster

scientific article published on 9 May 2004
SPG20 is mutated in Troyer syndrome, an hereditary spastic paraplegia.

scientific article
Genome evolution reveals biochemical networks and functional modules

scientific article
The identification of a conserved domain in both spartin and spastin, mutated in hereditary spastic paraplegia

scientific article
Family expansion and gene rearrangements contributed to the functional specialization of PRDM genes in vertebrates.

scientific article
FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.

scientific article published on 19 June 2009
Complex genomic rearrangements lead to novel primate gene function

scientific article
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria

scientific article
RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export

scientific article published on February 2004
A complex prediction: three-dimensional model of the yeast exosome.

scientific article published on July 2002
NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings.

scientific article
Structural analysis of the RZZ complex reveals common ancestry with multisubunit vesicle tethering machinery

scientific article
Generation and annotation of the DNA sequences of human chromosomes 2 and 4

scientific article
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes

scientific article
An analysis of IL-36 signature genes and individuals with IL1RL2 knockout mutations validates IL-36 as a psoriasis therapeutic target.

scientific article
Modification of Gene Duplicability during the Evolution of Protein Interaction Network

scientific article published on April 7, 2011
The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold

scientific article published in July 2003
The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

scientific article published on 03 January 2019
Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation

scientific article published in December 2009
CASH--a beta-helix domain widespread among carbohydrate-binding proteins

scientific article published in February 2002
Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency

scientific article published on 13 May 2014
Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes

scientific article
AMOP, a protein module alternatively spliced in cancer cells

scientific article published on 01 March 2002
Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes

scientific article published in January 2012
Ultradeep sequencing of a human ultraconserved region reveals somatic and constitutional genomic instability

scientific article
The WHy domain mediates the response to desiccation in plants and bacteria

scientific article published on 14 December 2004
Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes

scientific article
The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold

scientific article
Non-random retention of protein-coding overlapping genes in Metazoa

scientific article
Spatiotemporal segregation of human marginal zone and memory B cell populations in lymphoid tissue

scientific article published in Nature Communications
Very-KIND is a novel nervous system specific guanine nucleotide exchange factor for Ras GTPases

scientific article published on 15 August 2005
Synthetic lethal interaction between the tumour suppressor STAG2 and its paralog STAG1.

scientific article published on 5 April 2017
Recessive cancer genes engage in negative genetic interactions with their functional paralogs.

scientific article published on 19 December 2013
Tandem repeats modify the structure of human genes hosted in segmental duplications

scientific article published on 2 December 2009
The (r)evolution of cancer genetics

scientific article
Genetic Redundancy, Functional Compensation, and Cancer Vulnerability

scientific article published on 28 March 2016
MEGA-V: detection of variant gene sets in patient cohorts

scientific article published on 21 December 2016
A protocol for the update of references to scientific literature in biological databases.

scientific article published in January 2003
Deep sequencing of the X chromosome reveals the proliferation history of colorectal adenomas

scientific article
Mapping the Human Kinome in Response to DNA Damage

scientific article published on 01 January 2019
Mutations differ in normal and cancer cells of the oesophagus

scientific article published on 01 January 2019
Corrigendum: Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency

scientific article published in Nature Communications
Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma

scientific article published on 15 July 2019
Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

scientific article published on 26 January 2022
Preface. The seventh RECOMB-CG Workshop, September 27–29, 2009, Alfréd Rényi Institute of Mathematics, Budapest, Hungary

scientific article published in September 2010

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