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List of works by Francesca D Ciccarelli

A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution

scientific article published on 09 February 2022

A complex prediction: three-dimensional model of the yeast exosome.

scientific article published on July 2002

A protocol for the update of references to scientific literature in biological databases.

scientific article published in January 2003

AMOP, a protein module alternatively spliced in cancer cells

scientific article published on 01 March 2002

An analysis of IL-36 signature genes and individuals with IL1RL2 knockout mutations validates IL-36 as a psoriasis therapeutic target. ⬇️

scientific article

CASH--a beta-helix domain widespread among carbohydrate-binding proteins

scientific article published in February 2002

Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

scientific article published on 26 January 2022

Complex genomic rearrangements lead to novel primate gene function

scientific article

Corrigendum: Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency

scientific article published in Nature Communications

Deep sequencing of the X chromosome reveals the proliferation history of colorectal adenomas

scientific article

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

scientific article published on March 2013

Family expansion and gene rearrangements contributed to the functional specialization of PRDM genes in vertebrates.

scientific article

FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.

scientific article published on 19 June 2009

Generation and annotation of the DNA sequences of human chromosomes 2 and 4

scientific article

Genetic Redundancy, Functional Compensation, and Cancer Vulnerability

scientific article published on 28 March 2016

Genome evolution reveals biochemical networks and functional modules

scientific article

Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster

scientific article published on 9 May 2004

Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation

scientific article published in December 2009

MEGA-V: detection of variant gene sets in patient cohorts

scientific article published on 21 December 2016

Mapping the Human Kinome in Response to DNA Damage

scientific article published on 01 January 2019

Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency

scientific article published on 13 May 2014

Modification of Gene Duplicability during the Evolution of Protein Interaction Network ⬇️

scientific article published on April 7, 2011

Mutations differ in normal and cancer cells of the oesophagus

scientific article published on 01 January 2019

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes

scientific article

NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings.

scientific article

NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria

scientific article

Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes

scientific article published in January 2012

Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes

scientific article

Non-random retention of protein-coding overlapping genes in Metazoa

scientific article

Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways

scientific article

Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma

scientific article published on 15 July 2019

Patients with genetically heterogeneous synchronous colorectal cancer carry rare damaging germline mutations in immune-related genes.

scientific article

Preface. The seventh RECOMB-CG Workshop, September 27–29, 2009, Alfréd Rényi Institute of Mathematics, Budapest, Hungary

scientific article published in September 2010

RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export.

scientific article published on February 2004

Recent improvements to the SMART domain-based sequence annotation resource ⬇️

scientific article published on January 1, 2002

Recessive cancer genes engage in negative genetic interactions with their functional paralogs.

scientific article published on 19 December 2013

SMART 4.0: towards genomic data integration

scientific article (publication date: 2004)

SPG20 is mutated in Troyer syndrome, an hereditary spastic paraplegia.

scientific article

Spatiotemporal segregation of human marginal zone and memory B cell populations in lymphoid tissue

scientific article published in Nature Communications

Structural analysis of the RZZ complex reveals common ancestry with multisubunit vesicle tethering machinery

scientific article

Synthetic lethal interaction between the tumour suppressor STAG2 and its paralog STAG1.

scientific article published on 5 April 2017

Tandem repeats modify the structure of human genes hosted in segmental duplications

scientific article published on 2 December 2009

The (r)evolution of cancer genetics

scientific article

The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold

scientific article published in July 2003

The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

scientific article published on 03 January 2019

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold

scientific article

The WHy domain mediates the response to desiccation in plants and bacteria

scientific article published on 14 December 2004

The identification of a conserved domain in both spartin and spastin, mutated in hereditary spastic paraplegia

scientific article

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

scientific article

Ultradeep sequencing of a human ultraconserved region reveals somatic and constitutional genomic instability

scientific article

Very-KIND is a novel nervous system specific guanine nucleotide exchange factor for Ras GTPases

scientific article published on 15 August 2005

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