Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by Keith A. Crandall

2573. Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Lung Microbiome Diversity and Pulmonary Function

scholarly article by Michael Jason. Bozzella et al published 23 October 2019 in Open Forum Infectious Diseases

A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

article

A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement

scientific article

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

scholarly article by D.P. Martin published in January 2005

A New Species of Burrowing Crayfish Virilastacus Retamali (Decapoda: Parastacidae) from the Southern Chile Peatland

article

A classification of living and fossil genera of decapod crustaceans ⬇️

scientific article published in 2009

A comparison of phylogenetic network methods using computer simulation

scientific article

A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda).

scientific article

A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

scientific article published on 06 February 2020

A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala) ⬇️

scientific article

A new species of burrowing crayfish, Virilastacus rucapihuelensis (Crustacea: Decapoda: Parastacidae), from southern Chile

article

A new species of burrowing crayfish,Virilastacus jarai(Crustacea, Decapoda, Parastacidae) from central-southern Chile

article

A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

scientific article published on 01 April 2019

A phylogenomic framework, evolutionary timeline, and genomic resources for comparative studies of decapod crustaceans

A synthetic phylogeny of freshwater crayfish: insights for conservation

scientific article

APPLICATIONS OF PHYLOGENETICS TO ISSUES IN FRESHWATER CRAYFISH BIOLOGY

scholarly article by Keith A. Crandall published 2006 in Knowledge and Management of Aquatic Ecosystems: an international journal on aquatic ecosystems

Aegla chilota, new species of anomuran freshwater crab from Chiloé Island, western Patagonia

Airway microbial diversity is decreased in young children with cystic fibrosis compared to healthy controls but improved with CFTR modulation

scientific article published on 01 June 2020

All the better to see you with: a review of odonate color vision with transcriptomic insight into the odonate eye

article

Annotated checklist of anomuran decapod crustaceans of the world (exclusive of the Kiwaoidea and families Chirostylidae and Galatheidae of the Galatheoidea) Part III – Aegloidea ⬇️

scientific article published in 2013

Annotated checklist of anomuran decapod crustaceans of the world (exclusive of the Kiwaoidea and families Chirostylidae and Galatheidae of the Galatheoidea) – Preamble and scope ⬇️

scientific article published in 2013

Antibiotic multidrug resistance in the cystic fibrosis airway microbiome is associated with decreased diversity

scientific article published on 17 September 2018

Assessing the conservation status of the land snail Oreohelix peripherica wasatchensis (Family Oreohelicidae)

Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

scientific article published on 22 April 2020

Avoidance of extinction through nonexistence: the use of museum specimens and molecular genetics to determine the taxonomic status of an endangered freshwater crayfish

article

Baseline human gut microbiota profile in healthy people and standard reporting template

Baseline human gut microbiota profile in healthy people and standard reporting template

scientific article published on 11 September 2019

Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity

scientific article published on 25 May 2018

Beyond FST: Analysis of population genetic data for conservation

article

Biodiversity only makes sense in the light of evolution

scientific article

Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics

scholarly article by Alison S. Whiting et al published May 2000 in Animal Conservation

Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics

scholarly article by Keith A. Crandall published in 2000

COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases

scientific article published on 10 September 2020

Calculating expected DNA remnants from ancient founding events in human population genetics

scientific article

Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis

scientific article published on 22 February 2019

Characteristics and prediction of RNA structure.

scientific article published on 6 July 2014

Characteristics of equipartition for RNA structure

scientific article

Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC.

scientific article published on 29 September 2017

Characterization of the follicular dendritic cell reservoir of human immunodeficiency virus type 1.

scientific article

Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle <i>Pollicipes pollicipes</i>

scientific article published on 12 March 2022

Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America

scientific article

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

scientific article

Cocaine abuse and HIV-1 infection: epidemiology and neuropathogenesis

scientific article published in March 1998

Collecting and processing freshwater crayfishes

article

Comparing phylogenetic codivergence between polyomaviruses and their hosts

scientific article

Composition, Structure and Diversity of Soil Bacterial Communities before, during and after Transit through the Gut of the Earthworm <i>Aporrectodea caliginosa</i>

scientific article published on 13 May 2022

Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls

scientific article

Concordance and discordance of sequence survey methods for molecular epidemiology

scientific article

Conflicting evolutionary patterns due to mitochondrial introgression and multilocus phylogeography of the Patagonian freshwater crab Aegla neuquensis

scientific article

Conservation phylogenetics of Ozark crayfishes: Assigning priorities for aquatic habitat protection

scholarly article by Keith A. Crandall published May 1998 in Biological Conservation

Considering evolutionary processes in conservation biology

scientific article (publication date: July 2000)

Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

scientific article published on 12 November 2019

Crayfish Molecular Systematics: Using a Combination of Procedures to Estimate Phylogeny

article

Crayfish in the decapod lineage, their natural distribution and their threatened status

Cryptic diversity inEngaeusErichson,GeocharaxClark andGramastacusRiek (Decapoda : Parastacidae) revealed by mitochondrial 16S rDNA sequences

DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants.

scientific article

DNA evidence for nonhybrid origins of parthenogenesis in natural populations of vertebrates

scientific article published on 17 November 2009

Decapod Phylogenetics and Molecular Evolution

scholarly article published 16 June 2009

Deep phylogeny and character evolution in Thecostraca (Crustacea: Maxillopoda).

scientific article published on 24 April 2012

Different models, different trees: the geographic origin of PTLV-I.

scientific article published in November 1999

Different processes lead to similar patterns: a test of codivergence and the role of sea level and climate changes in shaping a southern temperate freshwater assemblage

scientific article

Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea)

scholarly article by Seth M. Bybee et al published October 2011 in Zoologischer Anzeiger

Disease progression and evolution of the HIV-1 env gene in 24 infected infants

scientific article published in November 2007

Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis

scientific article published in June 2007

Divergence and diversification in North American Psoraleeae (Fabaceae) due to climate change

scientific article (publication date: 17 December 2008)

Dominant clade‐featured SARS‐CoV‐2 co‐occurring mutations reveal plausible epistasis: An in silico based hypothetical model

scientific article published in 2021

Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma

scientific article published on 30 June 2015

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

scientific article published on 09 November 2020

Earth BioGenome Project: Sequencing life for the future of life

scientific article published on 23 April 2018

Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

scientific article published on 30 July 2021

Effective population sizes: missing measures and missing concepts

article published in 1999

Effective population sizes: missing measures and missing concepts

Empirical tests for ecological exchangeability

Entangled Aeglidae (Decapoda, Anomura): Additional evidence for cryptic species

scientific article published on 15 March 2021

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

scientific article published on 21 April 2020

Epidemiological and Evolutionary Dynamics of Pathogens

article

Epidemiological associations with genomic variation in SARS-CoV-2

scientific article published on 26 November 2021

Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: an in silico approach

scientific article published on 27 July 2020

Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

scientific article

Evaluating the performance of likelihood methods for detecting population structure and migration

scientific article published in April 2004

Evaluation of computational methods for human microbiome analysis using simulated data

scientific article published on 11 August 2020

Evaluation of methods for detecting recombination from DNA sequences: Computer simulations ⬇️

scientific article published on November 20, 2001

Evolution of Afrotropical freshwater crab lineages obscured by morphological convergence

scientific article

Evolution of Picornaviridae: An examination of phylogenetic relationships and cophylogeny

scholarly article by Nicole Lewis-Rogers & Keith A. Crandall published March 2010 in Molecular Phylogenetics and Evolution

Evolution underground: a molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson

scientific article published on 11 December 2008

Evolution. Genomic databases and the tree of life

scientific article

Evolutionary biology in biodiversity science, conservation, and policy: a call to action

scientific article

Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

scientific article published on 21 October 2020

Expanding the toolbox for phylogeographic analysis

scientific article

Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression

scientific article published on 27 April 2021

Faculty of 1000 evaluation for GenVisR: Genomic Visualizations in R

scholarly article published 21 October 2016

Faculty of 1000 evaluation for Prediction of missing sequences and branch lengths in phylogenomic data

Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

scientific article published on 8 September 2013

Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

article

Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies

scientific article (publication date: 2016)

Gene flow estimates in Utah's cougars imply management beyond Utah

article

Genetic diversity and molecular epidemiology of HIV transmission

article

Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity

scientific article published on 19 August 2020

GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

article

Global Diversity and Conservation of Freshwater Crayfish (Crustacea: Decapoda: Astacoidea)

Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae––Decapoda) in freshwater

Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae—Decapoda) in freshwater

Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules

article

Gut microbiome differences between wild and captive black rhinoceros - implications for rhino health

scientific article published on 28 May 2019

HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations

scientific article published on 26 December 2020

HIV-1 infected monozygotic twins: a tale of two outcomes

scientific article

HTLV type I/II in British Columbia Amerindians: a seroprevalence study and sequence characterization of an HTLV type IIa isolate

scientific article published in June 2000

Host taxonomy determines the composition, structure, and diversity of the earthworm cast microbiome under homogenous feeding conditions

scientific article published in 2022

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

scientific article published on 28 August 2020

Human Immunodeficiency Viruses (HIV)

Human Immunodeficiency Viruses (HIV)

Human immunodeficiency virus type 1 quasi species that rebound after discontinuation of highly active antiretroviral therapy are similar to the viral quasi species present before initiation of therapy

scientific article published on 8 December 2000

Identifying Links Between Genotype and Phenotype Using Marker Loci and Candidate Genes

article

Impact of Antibiotics on the Lung Microbiome and Lung Function in Children with Cystic Fibrosis One Year after Hospitalization for an Initial Pulmonary Exacerbation

scientific article published in 2022

Incorporating gaps as phylogenetic characters across eight DNA regions: ramifications for North American Psoraleeae (Leguminosae).

scientific article

Independent evolution of HIV type 1 in different brain regions

scientific article published in June 1999

Inflammation in children with cystic fibrosis: contribution of bacterial production of long-chain fatty acids

scientific article published on 02 March 2021

Infraorder Astacidea Latreille, 1802 p.p.: the freshwater crayfish

scholarly article

Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication

scientific article published on 03 June 2020

Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada

scientific article published on 13 August 2012

Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

scientific article published on 16 August 2015

Interspecies physiological variation as a tool for cross-species assessments of global warming-induced endangerment: validation of an intrinsic determinant of macroecological and phylogeographic structure

scientific article

Intraspecific Cladogram Estimation: Accuracy at Higher Levels of Divergence

scientific article published in 1994

Intraspecific gene genealogies: trees grafting into networks

scientific article (publication date: 2001)

Invasion by non-indigenous freshwater decapods of Malta and Sicily, central Mediterranean Sea

scientific article published in 2018

Isolation and characterization of di- and tetranucleotide microsatellite loci in the yellow-spotted night lizard Lepidophyma flavimaculatum (Squamata: Xantusiidae)

article

J. Avise., Molecular Markers, Natural History and Evolution

scientific article published in 1995

Jumpstarting phylogenetic analysis

scientific article published in January 2006

Kisspeptin/GPR54 System: What Do We Know About Its Role in Human Reproduction?

scientific article published on 11 September 2018

LINEAR HABITATS AND THE NESTED CLADE ANALYSIS: AN EMPIRICAL EVALUATION OF GEOGRAPHIC VERSUS RIVER DISTANCES USING AN OZARK CRAYFISH (DECAPODA: CAMBARIDAE)

article

Life in extreme environments: microbial diversity in Great Salt Lake, Utah

scientific article

Limited heterogeneity of HIV type 1 in infected mothers correlates with lack of vertical transmission

scientific article published on October 2000

Linear habitats and the nested clade analysis: an empirical evaluation of geographic versus river distances using an Ozark crayfish (Decapoda: Cambaridae) ⬇️

scientific article published on September 1, 2003

Living with the genetic signature of Miocene induced change: evidence from the phylogeographic structure of the endemic angulate tortoise Chersina angulata

scientific article published on 30 August 2007

Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

scientific article published on 03 May 2021

Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study

scientific article published on 28 April 2020

Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial

scientific article

Lost along the way: the significance of evolution in reverse

scientific article published in 2003

Lost branches on the tree of life

scientific article (publication date: September 2013)

MODELTEST: testing the model of DNA substitution

scientific article

Machine learning approaches to predict lupus disease activity from gene expression data

scientific article published on 03 July 2019

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

scientific article (publication date: 9 September 2008)

Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis

scientific article published on 19 September 2019

Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology

scientific article published on 7 April 2016

Methods for Analyzing Viral Evolution

Microbial diversity within the airway microbiome in chronic pediatric lung diseases

scientific article

Microbiome dynamics and genomic determinants of bovine mastitis

scientific article published on 20 September 2020

Mitochondrial DNA phylogeography and population history of the grey wolf canis lupus

scientific article (publication date: December 1999)

Model-based multi-locus estimation of decapod phylogeny and divergence times

scientific article

Molecular Markers, Natural History and Evolution

scientific article published in 1995

Molecular Population Genetics: Coalescent Methods Based on Summary Statistics

article

Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins

scientific article published on 19 October 2006

Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV).

scientific article

Molecular phylogenetics for conservation biology

scholarly article

Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae)

scientific article (publication date: 4 January 2013)

Molecular phylogeny and character evolution of the chthamaloid barnacles (Cirripedia: Thoracica).

scientific article published on 19 June 2012

Molecular phylogeny, systematics and morphological evolution of the acorn barnacles (Thoracica: Sessilia: Balanomorpha).

scientific article

Molecular systematics and biogeography of the southern South american freshwater "crabs" Aegla (decapoda: Anomura: Aeglidae) using multiple heuristic tree search approaches

scientific article published in October 2004

Molecular taxonomy in the dark: evolutionary history, phylogeography, and diversity of cave crayfish in the subgenus Aviticambarus, genus Cambarus

scientific article

Multi-locus DNA sequence data reveal a history of deep cryptic vicariance and habitat-driven convergence in the desert night lizard Xantusia vigilis species complex (Squamata: Xantusiidae).

scientific article

Multilocus Sequence Typing of Pathogens

Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea). ⬇️

scientific article

Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma

scientific article

Nested clade analysis statistics

article

Nested clade phylogeographic analysis for conservation genetics

article

New Species and New Records of Endemic Freshwater Crabs from the Atlantic Forest in Southern Brazil (Anomura: Aeglidae)

article

New methods for inferring population dynamics from microbial sequences

scientific article

New species and records of the genus Aegla Leach, 1820 (Crustacea, Anomura, Aeglidae) from the West-Central region of Rio Grande do Sul, Brazil

article

Novel tetrameric tip motifs (APGK and VPGK) in the V3 loop of HIV type 1 envelope sequences in blood and brain from two injection drug users in Miami, Florida

scientific article published in December 1997

On stabilising the names of the infraorders of thalassinidean shrimps, Axiidea de Saint Laurent, 1979 and Gebiidea de Saint Laurent, 1979 (Decapoda)

On the Phylogenetic Positioning of the South American Freshwater Crayfish Genera (Decapoda: Parastacidae)

scholarly article by Keith A. Crandall et al published 1 January 2000 in Journal of Crustacean Biology

On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy

scientific article (publication date: March 2006)

Ongoing Phenotypic and Genotypic Diversification in Adaptively Radiated Freshwater Crabs from Jamaica

Opsin phylogeny and evolution: a model for blue shifts in wavelength regulation

scientific article published in March 1995

Overexpressed somatic alleles are enriched in functional elements in Breast Cancer ⬇️

scientific article

PCR detection of host and HIV-1 sequences from archival brain tissue

scientific article published on April 2000

PHYLOGENETIC POSITION OF THE FRESHWATER ANOMURAN FAMILY AEGLIDAE

scientific article (publication date: August 2002)

PHYLOGENY ESTIMATION AND HYPOTHESIS TESTING USING MAXIMUM LIKELIHOOD

article

Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

scientific article

PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

scientific article

Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

scientific article published on 26 January 2013

Pathoscope: species identification and strain attribution with unassembled sequencing data

scientific article

Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas

scientific article published on 04 October 2018

Phototransduction Gene Expression and Evolution in Cave and Surface Crayfishes

article

Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

scientific article

Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America

scientific article published on 28 October 2009

Phylogenetic Approaches to Molecular Epidemiology

scholarly article published 2002

Phylogenetic Estimate of the Freshwater Crayfish (Decapoda: Astacidea) using Morphology and Molecules

article

Phylogenetic Inference Using Molecular Data

scholarly article published 16 June 2009

Phylogenetic Position of the Freshwater Anomuran Family Aeglidae

scholarly article by Marcos Pérez-Losada et al published 1 January 2002 in Journal of Crustacean Biology

Phylogenetic Relationships among the Species of Aegla (Anomura: Aeglidae) Freshwater Crabs from Chile

article

Phylogenetic Relationships and Molecular Adaptation Dynamics of Human Rhinoviruses

article

Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end.

scientific article

Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda)

scholarly article by Heather D. Bracken et al published March 2010 in Zoologica Scripta

Phylogenetic relationships between spiny, slipper and coral lobsters (Crustacea, Decapoda, Achelata).

scientific article

Phylogenetic relationships, character evolution, and taxonomic implications within the slipper lobsters (Crustacea: Decapoda: Scyllaridae).

scientific article published on 7 October 2011

Phylogenetic search through partial tree mixing

scientific article

Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans

scientific article

Phylogenetics links monster larva to deep-sea shrimp

scientific article

Phylogenetics of HIV

article

Phylogenomics and molecular evolution of polyomaviruses

scientific article

Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA.

scientific article published in October 2005

Phylogeny and evolutionary patterns in the Dwarf crayfish subfamily (Decapoda: Cambarellinae)

scientific article (publication date: 2012)

Phylogeny of the Thoracican Barnacles Based on 18S rDNA Sequences

scholarly article by D. James Harris et al published 1 January 2000 in Journal of Crustacean Biology

Phylogeny, extinction and conservation: embracing uncertainties in a time of urgency

scientific article

Phylogeographic patterning in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes) reveals the signature of historical climatic oscillations

article

Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster

scientific article published on 01 October 2004

Phylogeography reveals unexpectedly low genetic diversity in a widely distributed species: the case of the freshwater crab Aegla platensis (Decapoda: Anomura)

Pleistocene glaciation leaves deep signature on the freshwater crab Aegla alacalufi in Chilean Patagonia

scientific article

Population dynamics of Neisseria gonorrhoeae in Shanghai, China: a comparative study

scientific article

Population genetics of Neisseria gonorrhoeae in a high-prevalence community using a hypervariable outer membrane porB and 13 slowly evolving housekeeping genes

scientific article published on 8 June 2005

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

scientific article

Population genetics of the porB gene of Neisseria gonorrhoeae: different dynamics in different homology groups

scientific article published in March 2000

Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage

scientific article published on 21 February 2012

Procambarus fallax: Crandall, K.A

Publication in the Journal of Crustacean Biology

scientific article published in 2008

Publication in the Journal of Crustacean Biology

REANALYSIS OF THE RELATIONSHIPS AMONG THE CIRRIPEDIA AND THE ASCOTHORACIDA AND THE PHYLOGENETIC POSITION OF THE FACETOTECTA (MAXILLOPODA: THECOSTRACA) USING 18S rDNA SEQUENCES

scholarly article by Marcos Pérez-Losada et al published August 2002 in Journal of Crustacean Biology

Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method

scientific article

Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy

scientific article

Recombination in evolutionary genomics

scientific article

Remarkable convergent evolution in specialized parasitic Thecostraca (Crustacea)

scientific article

Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal? ⬇️

article published in 2018

Rhodopsin evolution in the dark

scientific article published in June 1997

SYSTEMATICS OF THE EUROPEAN ENDANGERED CRAYFISH SPECIES AUSTROPOTAMOBIUS PALLIPES (DECAPODA: ASTACIDAE)

article

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

Sea-level changes and palaeo-ranges: reconstruction of ancient shorelines and river drainages and the phylogeography of the Australian land crayfish Engaeus sericatus Clark (Decapoda: Parastacidae).

scientific article published on December 2008

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

scientific article published in June 2001

Selecting the Best-Fit Model of Nucleotide Substitution

article

Selecting the best-fit model of nucleotide substitution

scientific article published in August 2001

Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs

scientific article published on 29 June 2018

Similarity Searching Using BLAST

Simple (Wrong) Models for Complex Trees: A Case from Retroviridae

scientific article published in 2001

Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia

scientific article

Somatic mitochondrial DNA mutations in prostate cancer and normal appearing adjacent glands in comparison to age-matched prostate samples without malignant histology

scientific article published on July 2006

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Status, distribution, and genetics of Blair's fencing crayfish,Faxonella blairi(Decapoda: Cambaridae)

article

Subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes

scientific article published in December 2005

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

scientific article

Systematic pan-cancer analysis of somatic allele frequency.

scientific article

Systematics of the European Endangered Crayfish Species Austropotamobius Pallipes (Decapoda: Astacidae)

article

TCS: a computer program to estimate gene genealogies

scientific article (publication date: October 2000)

THE ZOOGEOGRAPHY AND CENTERS OF ORIGIN OF THE CRAYFISH SUBGENUS PROCERICAMBARUS (DECAPODA: CAMBARIDAE).

scientific article

Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics.

scientific article published on 13 October 2011

Taxonomic Revision of Cave Crayfish in the Genus Cambarus, Subgenus Aviticambarus (Decapoda: Cambaridae) with Descriptions of Two New Species, C. Speleocoopi and C. Laconensis, Endemic to Alabama, U.S.A

article

Taxonomic Revision of Cave Crayfishes in the Genus Orconectes, Subgenus Orconectes (Decapoda: Cambaridae) along the Cumberland Plateau, Including a Description of a New Species, Orconectes Barri

article

Taxonomic subdivisions within the fossorial skink subfamily Acontinae (Squamata: Scincidae) reconsidered: a multilocus perspective

scientific article published in 2006

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

scientific article published on 30 September 2019

Template:Chan et al., 2021 ⬇️

scientific article published in November 2021

Temporal trends in gonococcal population genetics in a high prevalence urban community

scientific article published on December 2006

Testing Species Boundaries in Biodiversity Studies

article

Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis

scientific article

Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae)

scientific article (publication date: 2012)

Testing species boundaries in an ancient species complex with deep phylogeographic history: genus Xantusia (Squamata: Xantusiidae).

scientific article published on 30 July 2004

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

scientific article published on 07 February 2020

The Evolution of Gene Expression Underlying Vision Loss in Cave Animals

article

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

scientific article

The HIV Latency Reversal Agent HODHBt Enhances NK Cell Effector and Memory-Like Functions by Increasing Interleukin-15-Mediated STAT Activation

scientific article published in 2022

The Origin, Epidemiology, and Phylodynamics of Human Immunodeficiency Virus Type 1 CRF47_BF

scientific article published on 01 January 2022

The Timing of the Diversification of the Freshwater Crayfishes

article published in 2009

The Zoogeography and Centers of Origin of the Crayfish Subgenus Procericambarus (Decapoda: Cambaridae)

The causes and consequences of HIV evolution

scientific article

The ecology and conservation status of Madagascar's endemic freshwater crayfish (Parastacidae; Astacoides)

scientific article (publication date: September 2007)

The effect of recombination on the accuracy of phylogeny estimation

scientific article published in March 2002

The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida).

scientific article

The evolution of HIV: inferences using phylogenetics

scientific article published on 27 November 2011

The evolution of foot-and-mouth disease virus: impacts of recombination and selection

scientific article published on 31 July 2008

The impact of species concept on biodiversity studies

scientific article published in June 2004

The molecular evolution of visual pigments of freshwater crayfishes (Decapoda: Cambaridae).

scientific article

The native South American crayfishes (Crustacea, Parastacidae): state of knowledge and conservation status

The tempo and mode of barnacle evolution

scientific article

Three new species of Aegla (Anomura) freshwater crabs from the upper Uruguay River hydrographic basin in Brazil

article

Three new species of Aeglidae ( AeglaLeach, 1820) from Paraná State, Brazil

article

Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution

scientific article published on 16 August 2019

Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis

scientific article published on 24 April 2019

Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus

scientific article published on 08 October 2019

Transcriptomic effects of dispersed oil in a non-model decapod crustacean

Transcriptomic effects of dispersed oil in a non-model decapod crustacean

TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees

scientific article published on 01 March 2003

Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children

scientific article

Unlocking capacities of genomics for the COVID-19 response and future pandemics

scientific article published on 08 April 2022

Unraveling evolutionary lineages in the limbless fossorial skink genus Acontias (Sauria: Scincidae): are subspecies equivalent systematic units?

scientific article

Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches

scientific article

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

scientific article published on 19 November 2014

Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses

scientific article published on 14 July 2020

Variants in the Kisspeptin-GnRH Pathway Modulate the Hormonal Profile and Reproductive Outcomes

scientific article published on 29 April 2020

Viral and Host Determinants of Neurovirulence of HIV-1 Infection ⬇️

scientific article published on January 1, 1998

Weight Gain in a Controlled Study of Risperidone in Children, Adolescents and Adults with Mental Retardation and Autism ⬇️

scientific article published on January 1, 2001

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes

scientific article published on 12 June 2014

Why sequence all eukaryotes?

scientific article published on 01 January 2022

Paulina is supported by:

About Paulina

Help