List of works - Gabriella Rozera

'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing.

scientific article published on 2 September 2011

Analysis of co-receptor usage of circulating viral and proviral HIV genome quasispecies by ultra-deep pyrosequencing in patients who are candidates for CCR5 antagonist treatment.

scientific article published on 5 November 2010

Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

scientific article published in November 2009

Bcl-2 inhibits the caspase-dependent apoptosis induced by SARS-CoV without affecting virus replication kinetics.

scientific article

Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients.

scientific article published on 11 November 2014

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

scientific article

Comment on Neumann et al. 'Differential antiviral effect of PEG-interferon-alpha-2b on HIV and HCV in the treatment of HIV/HCV co-infected patients'.

scientific article published in January 2008

Comparison of real-time PCR methods for measurement of HIV-1 proviral DNA.

scientific article

Coordinate induction of IFN-alpha and -gamma by SARS-CoV also in the absence of virus replication.

scientific article

Deep sequencing of plasma and proviral HIV-1 to establish coreceptor usage: what is the clinical impact of the quasispecies distribution?

scientific article published in September 2011

Detection of HIV-1 matrix protein p17 quasispecies variants in plasma of chronic HIV-1-infected patients by ultra-deep pyrosequencing

scientific article published on July 2014

Detection of haemagglutinin D222 polymorphisms in influenza A(H1N1)pdm09-infected patients by ultra-deep pyrosequencing

scientific article published on 03 August 2012

Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection

article

Early ART in primary HIV infection may also preserve lymphopoiesis capability in circulating haematopoietic progenitor cells: a case report.

scientific article published on 20 January 2015

Effect of raltegravir on the total and unintegrated proviral HIV DNA during raltegravir-based HAART

article

Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure

scientific article published on 10 July 2014

Extent of HCV NS3 protease variability and resistance-associated mutations assessed by next generation sequencing in HCV monoinfected and HIV/HCV coinfected patients

scientific article published on 13 August 2013

In-Depth Analysis of HA and NS1 Genes in A(H1N1)pdm09 Infected Patients

scientific article

Interferon May Prevent HIV Viral Rebound After HAART Interruption in HIV Patients

article

Longitudinal analysis of HIV-1 coreceptor tropism by single and triplicate HIV-1 RNA and DNA sequencing in patients undergoing successful first-line antiretroviral therapy

scientific article published on 23 October 2013

Low‐Abundance Drug Resistance Mutations: Extending the HIV Paradigm to Hepatitis B Virus

article

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

scientific article published on 12 February 2009

Monophyletic outbreak of Hepatitis A involving HIV-infected men who have sex with men, Rome, Italy 2008-2009.

scientific article published on 16 February 2012

Near full length hepatitis C virus genome reconstruction by next generation sequencing based on genotype-independent amplification

scientific article published on 23 March 2015

Next-generation sequencing technology in clinical virology

scientific article published on January 2013

Quasispecies tropism and compartmentalization in gut and peripheral blood during early and chronic phases of HIV-1 infection: possible correlation with immune activation markers

scientific article published on 18 October 2013

Role of HIV-1 matrix protein p17 variants in lymphoma pathogenesis.

scientific article

Slow response to entecavir treatment in treatment-naive HBV patients is conditioned by immune response rather than by the presence or selection of refractory variants

scientific article published on 25 November 2013

Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120

article

The basal activation state of DC subsets correlates with anti-HCV treatment outcome in HCV/HIV co-infected patients

scientific article published on 3 December 2010

The genotypic false positive rate determined by V3 population sequencing can predict the burden of HIV-1 CXCR4-using species detected by pyrosequencing

scientific article

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

scientific article published in September 2009

Virological characterization of patients treated early is able to control HIV-1 replication after multiple cycles of structured therapy interruption

article

List of works by Gabriella Rozera

'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing.

Analysis of co-receptor usage of circulating viral and proviral HIV genome quasispecies by ultra-deep pyrosequencing in patients who are candidates for CCR5 antagonist treatment.

Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

Bcl-2 inhibits the caspase-dependent apoptosis induced by SARS-CoV without affecting virus replication kinetics.

Bone marrow CD34+ progenitor cells may harbour HIV-DNA even in successfully treated patients.

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

Comment on Neumann et al. 'Differential antiviral effect of PEG-interferon-alpha-2b on HIV and HCV in the treatment of HIV/HCV co-infected patients'.

Comparison of real-time PCR methods for measurement of HIV-1 proviral DNA.

Coordinate induction of IFN-alpha and -gamma by SARS-CoV also in the absence of virus replication.

Deep sequencing of plasma and proviral HIV-1 to establish coreceptor usage: what is the clinical impact of the quasispecies distribution?

Detection of HIV-1 matrix protein p17 quasispecies variants in plasma of chronic HIV-1-infected patients by ultra-deep pyrosequencing

Detection of haemagglutinin D222 polymorphisms in influenza A(H1N1)pdm09-infected patients by ultra-deep pyrosequencing

Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection

Early ART in primary HIV infection may also preserve lymphopoiesis capability in circulating haematopoietic progenitor cells: a case report.

Effect of raltegravir on the total and unintegrated proviral HIV DNA during raltegravir-based HAART

Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure

Extent of HCV NS3 protease variability and resistance-associated mutations assessed by next generation sequencing in HCV monoinfected and HIV/HCV coinfected patients

In-Depth Analysis of HA and NS1 Genes in A(H1N1)pdm09 Infected Patients

Interferon May Prevent HIV Viral Rebound After HAART Interruption in HIV Patients

Longitudinal analysis of HIV-1 coreceptor tropism by single and triplicate HIV-1 RNA and DNA sequencing in patients undergoing successful first-line antiretroviral therapy

Low‐Abundance Drug Resistance Mutations: Extending the HIV Paradigm to Hepatitis B Virus

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

Monophyletic outbreak of Hepatitis A involving HIV-infected men who have sex with men, Rome, Italy 2008-2009.

Near full length hepatitis C virus genome reconstruction by next generation sequencing based on genotype-independent amplification

Next-generation sequencing technology in clinical virology

Quasispecies tropism and compartmentalization in gut and peripheral blood during early and chronic phases of HIV-1 infection: possible correlation with immune activation markers

Role of HIV-1 matrix protein p17 variants in lymphoma pathogenesis.

Slow response to entecavir treatment in treatment-naive HBV patients is conditioned by immune response rather than by the presence or selection of refractory variants

Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120

The basal activation state of DC subsets correlates with anti-HCV treatment outcome in HCV/HIV co-infected patients

The genotypic false positive rate determined by V3 population sequencing can predict the burden of HIV-1 CXCR4-using species detected by pyrosequencing

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

Virological characterization of patients treated early is able to control HIV-1 replication after multiple cycles of structured therapy interruption