List of works - Atsushi Ogawa

A Concept for Selection of Codon-Suppressor tRNAs Based on Read-Through Ribosome Display in an In Vitro Compartmentalized Cell-Free Translation System

scientific article published on 18 July 2012

A novel label-free biosensor using an aptazyme-suppressor-tRNA conjugate and an amber mutated reporter gene

scientific article published on 01 September 2008

An artificial aptazyme-based riboswitch and its cascading system in E. coli.

scientific article published on January 2008

Aptamer selection for the inhibition of cell adhesion with fibronectin as target.

scientific article

Aptazyme-based riboswitches as label-free and detector-free sensors for cofactors.

scientific article published on 15 March 2007

Artificial OFF-Riboswitches That Downregulate Internal Ribosome Entry without Hybridization Switches in a Eukaryotic Cell-Free Translation System.

scientific article published on 14 June 2017

Biofunction-assisted DNA detection through RNase H-enhanced 3' processing of a premature tRNA probe in a wheat germ extract

scientific article published in June 2016

Biofunction-assisted aptasensors based on ligand-dependent 3' processing of a suppressor tRNA in a wheat germ extract.

scientific article published in June 2015

Biofunction-assisted sensors based on a new method for converting aptazyme activity into reporter protein expression with high efficiency in wheat germ extract

scientific article published in October 2009

Canonical translation-modulating OFF-riboswitches with a single aptamer binding to a small molecule that function in a higher eukaryotic cell-free expression system

scientific article published on 19 June 2018

Correction: Biofunction-assisted aptasensors based on ligand-dependent 3' processing of a suppressor tRNA in a wheat germ extract

scientific article

Detection of Gold Nanoparticles Aggregation Using Light Scattering for Molecular Sensing

scientific article published on 01 March 2019

Dumbbell-shaped DNA analytes amplified by polymerase chain reaction for robust single-nucleotide polymorphism genotyping by affinity capillary electrophoresis.

scientific article published on 21 May 2013

Easy design of logic gates based on aptazymes and noncrosslinking gold nanoparticle aggregation

scientific article published on 07 July 2009

Engineering of ribosomal shunt-modulating eukaryotic ON riboswitches by using a cell-free translation system.

scientific article published on 19 December 2014

Hole trapping at N6-cyclopropyldeoxyadenosine suggests a direct contribution of adenine bases to hole transport through DNA.

scientific article published in August 2003

Identification of short untranslated regions that sufficiently enhance translation in high-quality wheat germ extract

scientific article published on 5 July 2014

Improvement of in vitro-transcribed amber suppressor tRNAs toward higher suppression efficiency in wheat germ extract

scientific article published on 09 November 2011

In Vitro Selection of RNA Aptamers Binding to Nanosized DNA for Constructing Artificial Riboswitches

scientific article published on 05 October 2020

In vitro selection of a 3' terminal short protector that stabilizes transcripts to improve the translation efficiency in a wheat germ extract

scientific article published on 29 June 2019

Investigation of end processing and degradation of premature tRNAs and their application to stabilization of in vitro transcripts in wheat germ extract

scientific article published on 03 December 2014

Isothermal sensitive detection of microRNA using an autonomous DNA machine recycling output as input ⬇️

scientific article published on August 16, 2010

Lewis acidity of gallium halides

scientific article published on 01 September 2002

Ligand-dependent upregulation of ribosomal shunting

scientific article

Ligand-responsive upregulation of 3' CITE-mediated translation in a wheat germ cell-free expression system

scientific article published on 15 December 2016

Modification of carbon metabolism in Synechococcus elongatus PCC 7942 by cyanophage-derived sigma factors for bioproduction improvement

scientific article published on 25 August 2018

Multiple-input and visible-output logic gates using signal-converting DNA machines and gold nanoparticle aggregation

scientific article

Multiple‐Catalytic Sensing of Nucleic Acid Sequences by Utilising a DNA–RNA–DNA Chimeric Antisense Probe and RNase H with a Eukaryotic Cell‐Free Translation System ⬇️

scientific article published on 07 March 2011

RNA aptazyme-tethered large gold nanoparticles for on-the-spot sensing of the aptazyme ligand ⬇️

scientific article published on 04 December 2010

Rational construction of eukaryotic OFF-riboswitches that downregulate internal ribosome entry site-mediated translation in response to their ligands ⬇️

scientific article published on 02 January 2012

Rational design of artificial ON-riboswitches.

scientific article published on January 2014

Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors

scientific article published on 11 January 2011

Rational optimization of amber suppressor tRNAs toward efficient incorporation of a non-natural amino acid into protein in a eukaryotic wheat germ extract

scientific article published on 2 February 2016

Simple and rapid colorimetric detection of cofactors of aptazymes using noncrosslinking gold nanoparticle aggregation

scientific article

Suppression of DNA-mediated charge transport by BamHI binding

scientific article

Termination-free prokaryotic protein translation by using anticodon-adjusted E. coli tRNASer as unified suppressors of the UAA/UGA/UAG stop codons. Read-through ribosome display of full-length DHFR with translated UTR as a buried spacer arm.

scientific article published in February 2006

Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in Cyanobacterium Synechococcus elongatus PCC 7942.

scientific article published on 21 August 2013

Theoretical analysis of Lewis basicity based on local electron-donating ability. Origin of basic strength of cyclic amines

scientific article published in October 2004

Thermodynamics-based rational design of DNA block copolymers for quantitative detection of single-nucleotide polymorphisms by affinity capillary electrophoresis.

scientific article

List of works by Atsushi Ogawa

A Concept for Selection of Codon-Suppressor tRNAs Based on Read-Through Ribosome Display in an In Vitro Compartmentalized Cell-Free Translation System

A novel label-free biosensor using an aptazyme-suppressor-tRNA conjugate and an amber mutated reporter gene

An artificial aptazyme-based riboswitch and its cascading system in E. coli.

Aptamer selection for the inhibition of cell adhesion with fibronectin as target.

Aptazyme-based riboswitches as label-free and detector-free sensors for cofactors.

Artificial OFF-Riboswitches That Downregulate Internal Ribosome Entry without Hybridization Switches in a Eukaryotic Cell-Free Translation System.

Biofunction-assisted DNA detection through RNase H-enhanced 3' processing of a premature tRNA probe in a wheat germ extract

Biofunction-assisted aptasensors based on ligand-dependent 3' processing of a suppressor tRNA in a wheat germ extract.

Biofunction-assisted sensors based on a new method for converting aptazyme activity into reporter protein expression with high efficiency in wheat germ extract

Canonical translation-modulating OFF-riboswitches with a single aptamer binding to a small molecule that function in a higher eukaryotic cell-free expression system

Correction: Biofunction-assisted aptasensors based on ligand-dependent 3' processing of a suppressor tRNA in a wheat germ extract

Detection of Gold Nanoparticles Aggregation Using Light Scattering for Molecular Sensing

Dumbbell-shaped DNA analytes amplified by polymerase chain reaction for robust single-nucleotide polymorphism genotyping by affinity capillary electrophoresis.

Easy design of logic gates based on aptazymes and noncrosslinking gold nanoparticle aggregation

Engineering of ribosomal shunt-modulating eukaryotic ON riboswitches by using a cell-free translation system.

Hole trapping at N6-cyclopropyldeoxyadenosine suggests a direct contribution of adenine bases to hole transport through DNA.

Identification of short untranslated regions that sufficiently enhance translation in high-quality wheat germ extract

Improvement of in vitro-transcribed amber suppressor tRNAs toward higher suppression efficiency in wheat germ extract

In Vitro Selection of RNA Aptamers Binding to Nanosized DNA for Constructing Artificial Riboswitches

In vitro selection of a 3' terminal short protector that stabilizes transcripts to improve the translation efficiency in a wheat germ extract

Investigation of end processing and degradation of premature tRNAs and their application to stabilization of in vitro transcripts in wheat germ extract

Isothermal sensitive detection of microRNA using an autonomous DNA machine recycling output as input ⬇️

Lewis acidity of gallium halides

Ligand-dependent upregulation of ribosomal shunting

Ligand-responsive upregulation of 3' CITE-mediated translation in a wheat germ cell-free expression system

Modification of carbon metabolism in Synechococcus elongatus PCC 7942 by cyanophage-derived sigma factors for bioproduction improvement

Multiple-input and visible-output logic gates using signal-converting DNA machines and gold nanoparticle aggregation

Multiple‐Catalytic Sensing of Nucleic Acid Sequences by Utilising a DNA–RNA–DNA Chimeric Antisense Probe and RNase H with a Eukaryotic Cell‐Free Translation System ⬇️

RNA aptazyme-tethered large gold nanoparticles for on-the-spot sensing of the aptazyme ligand ⬇️

Rational construction of eukaryotic OFF-riboswitches that downregulate internal ribosome entry site-mediated translation in response to their ligands ⬇️

Rational design of artificial ON-riboswitches.

Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors

Rational optimization of amber suppressor tRNAs toward efficient incorporation of a non-natural amino acid into protein in a eukaryotic wheat germ extract

Simple and rapid colorimetric detection of cofactors of aptazymes using noncrosslinking gold nanoparticle aggregation

Suppression of DNA-mediated charge transport by BamHI binding

Termination-free prokaryotic protein translation by using anticodon-adjusted E. coli tRNASer as unified suppressors of the UAA/UGA/UAG stop codons. Read-through ribosome display of full-length DHFR with translated UTR as a buried spacer arm.

Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in Cyanobacterium Synechococcus elongatus PCC 7942.

Theoretical analysis of Lewis basicity based on local electron-donating ability. Origin of basic strength of cyclic amines

Thermodynamics-based rational design of DNA block copolymers for quantitative detection of single-nucleotide polymorphisms by affinity capillary electrophoresis.