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List of works by Ryan Zurakowski

A compartment based model for the formation of 2-LTR circles after raltegravir intensification

A model predictive control based scheduling method for HIV therapy

scientific article published on 5 July 2005

An Integrated Spatial Dynamics-Pharmacokinetic Model Explaining Poor Penetration of Anti-retroviral Drugs in Lymph Nodes

scientific article published on 26 June 2020

Analysis of HIV-1 compartmental model parameters using Bayesian MCMC estimation

article

Approximate-model closed-loop minimal sampling method for HIV viral-load minima detection

scientific article published on January 2011

Closed-loop minimal sampling method for determining viral-load minima during switching.

scientific article published on July 2010

Controlling the Evolution of Resistance

scientific article published on March 2011

Episomal HIV-1 DNA and its relationship to other markers of HIV-1 persistence

scientific article published on 30 January 2018

Experiment Design for Early Molecular Events in HIV Infection.

scientific article published in May 2017

HIV 2-LTR experiment design optimization

scientific article published in PLoS ONE

HIV model parameter estimates from interruption trial data including drug efficacy and reservoir dynamics

scientific article

HIV-1 persistence in CD4+ T cells with stem cell-like properties

scientific article published on 12 January 2014

Implications of Measurement Assay Type in Design of HIV Experiments

scientific article published in December 2017

Increased inflammation in sanctuary sites may explain viral blips in HIV infection

scientific article published on August 2016

Long-term antiretroviral treatment initiated at primary HIV-1 infection affects the size, composition, and decay kinetics of the reservoir of HIV-1-infected CD4 T cells

scientific article

Measurement error robustness of a closed-loop minimal sampling method for HIV therapy switching ⬇️

scientific article published on January 1, 2011

Model-driven approaches for in vitro combination therapy using ONYX-015 replicating oncolytic adenovirus

scientific article published on 4 October 2006

Modeling uncertainty in single-copy assays for HIV.

scientific article published on 25 July 2012

Modeling-error robustness of a viral-load preconditioning strategy for HIV treatment switching.

scientific article

Modelling HIV-1 2-LTR dynamics following raltegravir intensification.

scientific article published on 8 May 2013

Naive infection predicts reservoir diversity and is a formidable hurdle to HIV eradication

scientific article published in 2021

Next Generation Sequencing in a direct model of HIV infection reveals important parallels and differences to in vivo reservoir dynamics

scientific article published on 12 February 2020

Nonlinear observer output-feedback MPC treatment scheduling for HIV ⬇️

scientific article published on May 27, 2011

Optimal antiviral switching to minimize resistance risk in HIV therapy

scientific article

Optimal control modulation of HIV reservoir formation rate by antigen infusion

scientific article published on 01 December 2019

Order preservation of expected information content using Unscented Transform approximation of multivariate prior distributions in HIV 2-LTR experiment design.

scientific article published in December 2016

Persistence of an intact HIV reservoir in phenotypically naive T cells

scientific article published on 15 October 2020

Positive feedback through inflammation creates bistable behavior in HIV tissue sanctuaries

scientific article published on 01 July 2019

Prospective HIV Clinical Trial Comparison by Expected Kullback-Leibler Divergence.

scientific article published in July 2016

Quantitative analysis of viral persistence and transient viral load rebound from HIV clinical data

scientific article

Resistance evolution in HIV - modeling when to intervene

scientific article

Robust closed-loop minimal sampling method for HIV therapy switching strategies.

scientific article

Significant Unresolved Questions and Opportunities for Bioengineering in Understanding and Treating COVID-19 Disease Progression

scientific article published on 27 July 2020

Spatial modeling of HIV cryptic viremia and 2-LTR formation during raltegravir intensification.

scientific article published on 28 December 2013

Synaptic transmission may provide an evolutionary benefit to HIV through modulation of latency

article

Using the Tools we Have: Low-efficacy Vaccines and HIV.

scientific article published on 12 December 2015

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