List of works - Osvaldo Zagordi

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

scientific article

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

scientific article published on 01 March 2010

Deep sequencing of hepatitis C virus hypervariable region 1 reveals no correlation between genetic heterogeneity and antiviral treatment outcome

scientific article

Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.

scientific article

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

scientific article

Finite size corrections to random Boolean networks

Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

scientific article published on 19 February 2005

Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses

scientific article

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model

scientific article published on January 2014

Hepatitis C virus (HCV) genotype 1b displays higher genetic variability of hypervariable region 1 (HVR1) than genotype 3

scientific article published on 06 September 2019

High-throughput sequencing of human immunoglobulin variable regions with subtype identification.

scientific article

MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing

scientific article published on 17 November 2016

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

scientific article

Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus

scientific article

Read length versus depth of coverage for viral quasispecies reconstruction

scientific article

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data ⬇️

scientific article (publication date: 26 April 2011)

Spouse-to-Spouse Transmission and Evolution of Hypervariable Region 1 and 5' Untranslated Region of Hepatitis C Virus Analyzed by Next-Generation Sequencing

scientific article

Ultra-deep sequencing for the analysis of viral populations

scientific article published on 17 August 2011

Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis

scientific article published on 28 April 2013

Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains.

scientific article

List of works by Osvaldo Zagordi

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

Deep sequencing of hepatitis C virus hypervariable region 1 reveals no correlation between genetic heterogeneity and antiviral treatment outcome

Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

Finite size corrections to random Boolean networks

Forcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisons

Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model

Hepatitis C virus (HCV) genotype 1b displays higher genetic variability of hypervariable region 1 (HVR1) than genotype 3

High-throughput sequencing of human immunoglobulin variable regions with subtype identification.

MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing

Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus

Read length versus depth of coverage for viral quasispecies reconstruction

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data ⬇️

Spouse-to-Spouse Transmission and Evolution of Hypervariable Region 1 and 5' Untranslated Region of Hepatitis C Virus Analyzed by Next-Generation Sequencing

Ultra-deep sequencing for the analysis of viral populations

Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis

Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains.