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List of works by Sergii Afonin

'Boomerang'-like insertion of a fusogenic peptide in a lipid membrane revealed by solid-state 19F NMR.

scientific article published in February 2004

19F NMR Analysis of the Antimicrobial Peptide PGLa Bound to Native Cell Membranes from Bacterial Protoplasts and Human Erythrocytes

article

19F NMR screening of unrelated antimicrobial peptides shows that membrane interactions are largely governed by lipids

article published in 2014

4-fluorophenylglycine as a label for 19F NMR structure analysis of membrane-associated peptides

scientific article published in November 2003

A Convenient Route to Trifluoromethyl-Substituted Cyclopropane Derivatives

A critical evaluation of the conformational requirements of fusogenic peptides in membranes

A19F NMR Label to Substitute Polar Amino Acids in Peptides: A CF3-Substituted Analogue of Serine and Threonine

scientific article published on 12 December 2012

Action of the multifunctional peptide BP100 on native biomembranes examined by solid-state NMR

Alignment of druglike compounds in lipid bilayers analyzed by solid-state (19)F-NMR and molecular dynamics, based on dipolar couplings of adjacent CF3 groups

scientific article published on 13 April 2012

An optimized protocol for the multigram synthesis of 3-(trifluoromethyl)bicyclo[1.1.1]pent-1-ylglycine (CF3-Bpg)

Antimicrobial Peptides can Enhance the Risk of Persistent Infections

scientific article published on August 2012

Antimicrobial peptide gramicidin S is accumulated in granules of producer cells for storage of bacterial phosphagens

scientific article

Chemical labeling strategy with (R)- and (S)-trifluoromethylalanine for solid state 19F NMR analysis of peptaibols in membranes

scientific article published in November 2009

Coding and decoding libraries of sequence-defined functional copolymers synthesized via photoligation

scientific article (publication date: 30 November 2016)

Compatibility of the conformationally rigid CF3-Bpg side chain with the hydrophobic coiled-coil interface

scientific article published on 13 April 2010

Concentration-dependent realignment of the antimicrobial peptide PGLa in lipid membranes observed by solid-state 19F-NMR.

scientific article published on 4 February 2005

Conformation and membrane orientation of amphiphilic helical peptides by oriented circular dichroism

scientific article published on 11 July 2008

Conformational Plasticity of the Cell-Penetrating Peptide SAP As Revealed by Solid-State 19F-NMR and Circular Dichroism Spectroscopies.

scientific article published on 13 June 2017

Conformationally Rigid Trifluoromethyl-Substituted α-Amino Acid Designed for Peptide Structure Analysis by Solid-State19F NMR Spectroscopy

article

Control and role of pH in peptide-lipid interactions in oriented membrane samples

scientific article published on 12 December 2014

Controlling biological activity with light: diarylethene-containing cyclic peptidomimetics

scientific article

Curvature engineering: positive membrane curvature induced by epsin N-terminal peptide boosts internalization of octaarginine.

scientific article published on 23 July 2013

Delivering Structural Information on the Polar Face of Membrane-Active Peptides: (19) F-NMR Labels with a Cationic Side Chain

scientific article published on 20 October 2016

Delivery of SiC-based nanoparticles into live cells driven by cell-penetrating peptides SAP and SAP-E

article by T. Serdiuk et al published 2015 in RSC Advances

Design and Synthesis of a Monofluoro-Substituted Aromatic Amino Acid as a Conformationally Restricted19F NMR Label for Membrane-Bound Peptides

article by Anton N. Tkachenko et al published 24 April 2014 in European Journal of Organic Chemistry

Design, Synthesis, and Application of a Trifluoromethylated Phenylalanine Analogue as a Label to Study Peptides by Solid-State19F NMR Spectroscopy

scientific article published on 07 May 2013

Design, Synthesis, and Application of an Optimized Monofluorinated Aliphatic Label for Peptide Studies by Solid-State (19) F NMR Spectroscopy

scientific article published on 5 October 2016

Diarylethene moiety as an enthalpy-entropy switch: photoisomerizable stapled peptides for modulating p53/MDM2 interaction

scientific article published on 11 May 2020

Diphytanoyl lipids as model systems for studying membrane-active peptides

scientific article

Direct Photocontrol of Peptidomimetics: An Alternative to Oxygen-Dependent Photodynamic Cancer Therapy

scientific article published on 30 March 2016

Does a methionine-to-norleucine substitution in PGLa influence peptide-membrane interactions?

scientific article published on 3 June 2016

Dynamic transitions of membrane-active peptides

scientific article

Efficiently Photocontrollable or Not? Biological Activity of Photoisomerizable Diarylethenes

scientific article published on 03 July 2018

Erratum: Coding and decoding libraries of sequence-defined functional copolymers synthesized via photoligation

scientific article

Evaluating the amino acid CF3-bicyclopentylglycine as a new label for solid-state19F-NMR structure analysis of membrane-bound peptides

article

Fermentation and Cost-Effective 13C/15N Labeling of the Nonribosomal Peptide Gramicidin S for Nuclear Magnetic Resonance Structure Analysis

scientific article published on 20 March 2015

Flexibility vs rigidity of amphipathic peptide conjugates when interacting with lipid bilayers

scientific article published on 25 September 2017

Folding and self-assembly of the TatA translocation pore based on a charge zipper mechanism

scientific article

Frontispiece: Efficiently Photocontrollable or Not? Biological Activity of Photoisomerizable Diarylethenes

Highly reactive bis-cyclooctyne-modified diarylethene for SPAAC-mediated cross-linking

Hydrophobic Matching Controls the Tilt and Stability of the Dimeric Platelet-derived Growth Factor Receptor (PDGFR)   Transmembrane Segment

scientific article

In Vivo Behavior of the Antibacterial Peptide Cyclo[RRRWFW], Explored Using a 3-Hydroxychromone-Derived Fluorescent Amino Acid

scientific article published on 28 June 2021

Incorporation of cis- and trans-4,5-Difluoromethanoprolines into Polypeptides

scientific article published in 2012

Incorporation of cis- and trans-4,5-difluoromethanoprolines into polypeptides

scientific article published on 28 September 2012

Incorporation of labile trans-4,5-difluoromethanoproline into a peptide as a stable label for 19F NMR structure analysis

article

Inhibition of Pseudomonas aeruginosa biofilm formation and expression of virulence genes by selective epimerization in the peptide Esculentin-1a(1-21)NH2

scientific article published on 13 June 2019

Interaction of the fusogenic peptide B18 in its amyloid-state with lipid membranes studied by solid state NMR

article published in 2004

Lactam-Stapled Cell-Penetrating Peptides: Cell Uptake and Membrane Binding Properties

scientific article published on 18 September 2017

Light-controllable dithienylethene-modified cyclic peptides: photoswitching the in vivo toxicity in zebrafish embryos

scientific article published on 07 January 2020

Loosening of Lipid Packing Promotes Oligoarginine Entry into Cells.

scientific article published in June 2017

Membrane Thinning and Thickening Induced by Membrane-Active Amphipathic Peptides.

scientific article

Nanomolar Synthesis in Droplet Microarrays with UV-Triggered On-Chip Cell Screening

scientific article published on 27 January 2020

Optimized Protocol for Synthesis of Cyclic Gramicidin S: Starting Amino Acid Is Key to High Yield

Orientation and Location of the Cyclotide Kalata B1 in Lipid Bilayers Revealed by Solid-State NMR.

scientific article

Orthogonal ¹⁹F-labeling for solid-state NMR reveals the conformation and orientation of short peptaibols in membranes

scientific article

Peptoidic amino- and guanidinium-carrier systems: targeted drug delivery into the cell cytosol or the nucleus

scientific article published on 24 January 2008

Solid State NMR Structure Analysis of the Antimicrobial Peptide Gramicidin S in Lipid Membranes: Concentration-Dependent Re-alignment and Self-Assembly as a β-Barrel

article

Solid state 19F NMR parameters of fluorine-labeled amino acids. Part II: aliphatic substituents

scientific article published on 3 December 2007

Solid state NMR analysis of the dipolar couplings within and between distant CF3-groups in a membrane-bound peptide

scientific article published on 21 August 2006

Solid-state (19)F-NMR of peptides in native membranes.

scientific article published on January 2012

Spatial structure of heptapeptide Aβ(16-22) (beta-amyloid Aβ(1-40) active fragment) in solution and in complex with a biological membrane model

scientific article

Special issue on membrane-active peptides

scientific article published on 01 February 2011

Stereochemical effects on the aggregation and biological properties of the fibril-forming peptide [KIGAKI]3 in membranes

scientific article published on 7 May 2013

Structural Behavior of the Peptaibol Harzianin HK VI in a DMPC Bilayer: Insights from MD Simulations.

scientific article published in June 2017

Structural and functional characterization of the pore-forming domain of pinholin S2168

scientific article published on 05 November 2020

Structural role of the conserved cysteines in the dimerization of the viral transmembrane oncoprotein E5.

scientific article

Structural role of tyrosine in Bombyx mori silk fibroin, studied by solid-state NMR and molecular mechanics on a model peptide prepared as silk I and II.

scientific article

Structure analysis and conformational transitions of the cell penetrating peptide transportan 10 in the membrane-bound state

scientific article

Structure analysis of the membrane-bound PhoD signal peptide of the Tat translocase shows an N-terminal amphiphilic helix

scientific article published on 10 August 2012

Structure-Activity Relationships of Photoswitchable Diarylethene-Based β-Hairpin Peptides as Membranolytic Antimicrobial and Anticancer Agents

scientific article published on 04 December 2018

Supreme activity of gramicidin S against resistant, persistent and biofilm cells of staphylococci and enterococci

scientific article published on 29 November 2019

Synthesis of trifluoromethyl-substituted proline analogues as 19F NMR labels for peptides in the polyproline II conformation

scientific article published in January 2008

TAT-RasGAP<sub>317-326</sub> kills cells by targeting inner-leaflet-enriched phospholipids

scientific article published on 30 November 2020

Temperature-dependent transmembrane insertion of the amphiphilic peptide PGLa in lipid bilayers observed by solid state 19F NMR spectroscopy

scientific article published in December 2008

The ability of Aneurinibacillus migulanus (Bacillus brevis) to produce the antibiotic gramicidin S is correlated with phenotype variation

scientific article

The cell-penetrating peptide TAT(48-60) induces a non-lamellar phase in DMPC membranes

Therapeutic Potential of Gramicidin S in the Treatment of Root Canal Infections.

scientific article published on 07 September 2016

Using a Sterically Restrictive Amino Acid as a19F NMR label To Monitor and To Control Peptide Aggregation in Membranes

scientific article published on 01 December 2008

γ-(S)-Trifluoromethyl proline: evaluation as a structural substitute of proline for solid state (19)F-NMR peptide studies.

scientific article

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