List of works - Shannon K. McWeeney

The BioPAX community standard for pathway data sharing

scientific article (publication date: September 2010)

Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.

scientific article published in December 2004

Oncogenic CSF3R mutations in chronic neutrophilic leukemia and atypical CML

scientific article

MIFlowCyt: the minimum information about a Flow Cytometry Experiment

scientific article

Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

scientific article

A viral microRNA down-regulates multiple cell cycle genes through mRNA 5'UTRs

scientific article

Modeling host genetic regulation of influenza pathogenesis in the collaborative cross

scientific article (publication date: February 2013)

Identification of {beta}-catenin binding regions in colon cancer cells using ChIP-Seq

scientific article

The Plasmodium genome database

scientific article published in Nature

Utilizing RNA-Seq data for de novo coexpression network inference

scientific article

Androgen receptor promotes ligand-independent prostate cancer progression through c-Myc upregulation

scientific article

Cytomegalovirus miRNAs target secretory pathway genes to facilitate formation of the virion assembly compartment and reduce cytokine secretion.

scientific article

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

scientific article published on 06 August 2013

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

scientific article published on 30 January 2013

Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice

scientific article published on February 2012

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus

scientific article

SNPs matter: impact on detection of differential expression.

scientific article

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

scientific article

Functional and genomic context in pathway analysis of GWAS data

scientific article

Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models

scientific article

Selection for drinking in the dark alters brain gene coexpression networks.

scientific article published on 29 March 2013

On the integration of alcohol-related quantitative trait loci and gene expression analyses

scientific article published in October 2004

Genes, behavior and next-generation RNA sequencing.

scientific article published on 28 December 2012

Renal gene and protein expression signatures for prediction of kidney disease progression

scientific article

An antisense transcript induced by Wnt/beta-catenin signaling decreases E2F4.

scientific article published on 22 November 2006

Similar gene expression profiles do not imply similar tissue functions

scientific article

LSD1 activates a lethal prostate cancer gene network independently of its demethylase function.

scientific article published on 26 March 2018

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

scientific article

A Mouse Model of Chronic West Nile Virus Disease

scientific article (publication date: November 2016)

Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library

scientific article

Distribution of menin-occupied regions in chromatin specifies a broad role of menin in transcriptional regulation

scientific article published in February 2007

Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations

scientific article published on May 13, 2015

Deoxyribonucleic acid microarray analysis of gene expression pattern in the arcuate nucleus/ventromedial nucleus of hypothalamus during lactation

scientific article published on 7 July 2005

A comprehensive collection of systems biology data characterizing the host response to viral infection

scientific article

Protein co-expression network analysis (ProCoNA).

scientific article published on June 2013

Protein database and quantitative analysis considerations when integrating genetics and proteomics to compare mouse strains.

scientific article

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs.

scientific article

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection.

scientific article published on 30 September 2016

A systems framework for vaccine design

scientific article published on October 2013

Dual-trait selection for ethanol consumption and withdrawal: genetic and transcriptional network effects

scientific article published in December 2014

Gene networks and haloperidol-induced catalepsy.

scientific article

Limited clinical utility of a genetic risk score for the prediction of fracture risk in elderly subjects

scientific article

Locus and population specific evolution in HLA class II genes.

scientific article published on January 1999

Systems immunogenetics of vaccines

scientific article (publication date: April 2013)

A DNA methylation microarray-based study identifies ERG as a gene commonly methylated in prostate cancer

scientific article

Translational gene mapping of cognitive decline

scientific article published on 14 December 2006

Genetic factors involved in risk for methamphetamine intake and sensitization.

scientific article published on 13 November 2013

CSF1R inhibitors exhibit antitumor activity in acute myeloid leukemia by blocking paracrine signals from support cells

scientific article published on 13 November 2018

Complex genetics of interactions of alcohol and CNS function and behavior

scientific article

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

List of works by Shannon K. McWeeney

The BioPAX community standard for pathway data sharing

Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions.

Oncogenic CSF3R mutations in chronic neutrophilic leukemia and atypical CML

MIFlowCyt: the minimum information about a Flow Cytometry Experiment

Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

A viral microRNA down-regulates multiple cell cycle genes through mRNA 5'UTRs

Modeling host genetic regulation of influenza pathogenesis in the collaborative cross

Identification of {beta}-catenin binding regions in colon cancer cells using ChIP-Seq

The Plasmodium genome database

Utilizing RNA-Seq data for de novo coexpression network inference

Androgen receptor promotes ligand-independent prostate cancer progression through c-Myc upregulation

Cytomegalovirus miRNAs target secretory pathway genes to facilitate formation of the virion assembly compartment and reduce cytokine secretion.

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus

SNPs matter: impact on detection of differential expression.

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse

Functional and genomic context in pathway analysis of GWAS data

Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models

Selection for drinking in the dark alters brain gene coexpression networks.

On the integration of alcohol-related quantitative trait loci and gene expression analyses

Genes, behavior and next-generation RNA sequencing.

Renal gene and protein expression signatures for prediction of kidney disease progression

An antisense transcript induced by Wnt/beta-catenin signaling decreases E2F4.

Similar gene expression profiles do not imply similar tissue functions

LSD1 activates a lethal prostate cancer gene network independently of its demethylase function.

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

A Mouse Model of Chronic West Nile Virus Disease

Human Mycobacterium tuberculosis CD8 T Cell Antigens/Epitopes Identified by a Proteomic Peptide Library

Distribution of menin-occupied regions in chromatin specifies a broad role of menin in transcriptional regulation

Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations

Deoxyribonucleic acid microarray analysis of gene expression pattern in the arcuate nucleus/ventromedial nucleus of hypothalamus during lactation

A comprehensive collection of systems biology data characterizing the host response to viral infection

Protein co-expression network analysis (ProCoNA).

Protein database and quantitative analysis considerations when integrating genetics and proteomics to compare mouse strains.

High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs.

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection.

A systems framework for vaccine design

Dual-trait selection for ethanol consumption and withdrawal: genetic and transcriptional network effects

Gene networks and haloperidol-induced catalepsy.

Limited clinical utility of a genetic risk score for the prediction of fracture risk in elderly subjects

Locus and population specific evolution in HLA class II genes.

Systems immunogenetics of vaccines

A DNA methylation microarray-based study identifies ERG as a gene commonly methylated in prostate cancer

Translational gene mapping of cognitive decline

Genetic factors involved in risk for methamphetamine intake and sensitization.

CSF1R inhibitors exhibit antitumor activity in acute myeloid leukemia by blocking paracrine signals from support cells

Complex genetics of interactions of alcohol and CNS function and behavior

Corrigendum: The BioPAX community standard for pathway data sharing