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List of works by Jonathan D. Dinman

A Ribosomopathy Reveals Decoding Defective Ribosomes Driving Human Dysmorphism ⬇️

scientific article

A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site

scientific article

A new system for naming ribosomal proteins

scientific article

A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element

scientific article published on 03 February 2004

A rapid, inexpensive yeast-based dual-fluorescence assay of programmed--1 ribosomal frameshifting for high-throughput screening.

scientific article

A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal

scientific article

Ablation of Programmed -1 Ribosomal Frameshifting in Venezuelan Equine Encephalitis Virus Results in Attenuated Neuropathogenicity

scientific article

An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome

scientific article published on 25 September 2006

An extensive network of information flow through the B1b/c intersubunit bridge of the yeast ribosome

scientific article

An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae.

scientific article

An ‘integrated model’ of programmed ribosomal frameshifting

scientific article published on 01 September 2002

Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis

scientific article published on 31 March 2014

Cell cycle control (and more) by programmed -1 ribosomal frameshifting: implications for disease and therapeutics

scientific article

Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems.

scientific article

Control of gene expression by translational recoding.

scientific article published on January 2012

Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency

scientific article

Differentiating between near- and non-cognate codons in Saccharomyces cerevisiae

scientific article

EGR1 upregulation following Venezuelan equine encephalitis virus infection is regulated by ERK and PERK pathways contributing to cell death

scientific article published on 31 October 2019

Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast ⬇️

scientific article published on November 24, 2010

Eukaryotic rpL10 drives ribosomal rotation

scientific article published on 8 November 2013

Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications

scientific article

Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough.

scientific article

Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus.

scientific article published on October 2011

Functional and structural characterization of the chikungunya virus translational recoding signals

scientific article published in Journal of Biological Chemistry

High throughput structural analysis of yeast ribosomes using hSHAPE ⬇️

scientific article published on May 1, 2011

Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation.

scientific article

Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae

scientific article published on 7 December 2006

Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis.

scientific article

Integration of residue-specific acid cleavage into proteomic workflows

scientific article published on 29 September 2007

Major sperm protein genes from Onchocerca volvulus.

scientific article

Mechanisms and implications of programmed translational frameshifting

scientific article

Molecular biology: Entry signals control development

scientific article

Mutations in the MOF2/SUI1 gene affect both translation and nonsense-mediated mRNA decay.

scientific article

New targets for antivirals: the ribosomal A-site and the factors that interact with it.

scientific article published in August 2002

Onchocerca volvulus: molecular cloning, primary structure, and expression of a microfilarial surface-associated antigen.

scientific article

PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals

scientific article

Pathways to Specialized Ribosomes: The Brussels Lecture

scientific article

Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems

scientific article

Pokeweed antiviral protein accesses ribosomes by binding to L3.

scientific article

Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene

scientific article published in January 2017

RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus.

scientific article published on 28 December 2012

Reprogramming the genetic code: The emerging role of ribosomal frameshifting in regulating cellular gene expression

scientific article

Residue and site-specific labeling of CCR5 RNA pseudoknot reveals internal motions that correlate with microRNA binding.

scientific article published on 7 February 2018

Ribosomal Lesions Promote Oncogenic Mutagenesis

scientific article published on 27 November 2018

Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway

scientific article

Ribosomal frameshifting in yeast viruses.

scientific article published on September 1995

Ribosomal protein L3 functions as a 'rocker switch' to aid in coordinating of large subunit-associated functions in eukaryotes and Archaea.

scientific article

Ribosomal protein L3: gatekeeper to the A site

scientific article published on March 2007

Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism

scientific article published on 01 January 2020

Ribosomal protein uS19 mutants reveal its role in coordinating ribosome structure and function.

scientific article

Ribosome binding to a 5' translational enhancer is altered in the presence of the 3' untranslated region in cap-independent translation of turnip crinkle virus.

scientific article published on 9 March 2011

Ribosomes in the balance: structural equilibrium ensures translational fidelity and proper gene expression

scientific article published on 11 November 2014

Ribosomopathies and the paradox of cellular hypo- to hyperproliferation.

scientific article

Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae.

scientific article

Scaring Ribosomes Shiftless

scientific article published on 27 March 2019

Shapeshifting RNAs guide innate immunity

scientific article published in Journal of Biological Chemistry

Single-molecule measurements of the CCR5 mRNA unfolding pathways.

scientific article published on January 2014

Slippery ribosomes prefer shapeshifting mRNAs

scientific article published on 09 September 2019

Small molecule inhibitors of Ago2 decrease Venezuelan equine encephalitis virus replication

scientific article published on 18 October 2014

Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting.

scientific article

Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis-Acting RNA Elements.

scientific article published on 23 May 2016

Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae

scientific article

Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)

scientific article published on 22 June 2020

Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS-CoV-2

scientific article (preprint)

Structure/function analysis of yeast ribosomal protein L2.

scientific article published on 7 February 2008

The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting

scientific article

The Functional Role of eL19 and eB12 Intersubunit Bridge in the Eukaryotic Ribosome

scientific article published on 30 March 2016

The central core region of yeast ribosomal protein L11 is important for subunit joining and translational fidelity ⬇️

scientific article published on April 26, 2011

The eukaryotic ribosome: current status and challenges

scientific article published on 31 December 2008

The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure

scientific article

The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting

scientific article

The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation.

scientific article

Torsional restraint: a new twist on frameshifting pseudoknots

scientific article

Trajectories of the ribosome as a Brownian nanomachine

scientific article

Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents

scientific article published on 01 April 1998

Translational recoding signals: Expanding the synthetic biology toolbox

scientific article published on 01 April 2019

Ty1 retrotransposition and programmed +1 ribosomal frameshifting require the integrity of the protein synthetic translocation step

scientific article published in July 2001

Venezuelan Equine Encephalitis Virus Induces Apoptosis through the Unfolded Protein Response Activation of EGR1.

scientific article published on 20 January 2016

rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance.

scientific article published on 18 January 2008

rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

scientific article published on November 2011

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