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List of works by Denise Kühnert

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

scholarly article published 25 March 2019

A58 Epidemic dynamics of ancient disease outbreaks

article published in 2019

Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.

scientific article

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

BEAST 2: a software platform for Bayesian evolutionary analysis

scientific article (publication date: April 2014)

Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV) ⬇️

scientific article published on December 17, 2012

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

scientific article published on 23 May 2020

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

scientific article published on 04 November 2020

Efficient Bayesian inference under the structured coalescent

scientific article published on 20 April 2014

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020

Field-based sciences must transform in response to COVID-19

scientific article published on 14 September 2020

How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?

scientific article

Influenza a virus migration and persistence in North American wild birds

scientific article

Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data

scientific article

Language trees with sampled ancestors support a hybrid model for the origin of Indo-European languages

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

scientific article published on 10 May 2018

Origin and Health Status of First-Generation Africans from Early Colonial Mexico

scientific article published on 17 April 2020

Origin of modern syphilis and emergence of a contemporary pandemic cluster

article

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

scientific article

Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens

scientific article published on 05 July 2019

Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage.

scientific article published on 25 January 2018

Phylodynamic analysis of HIV sub-epidemics in Mochudi, Botswana

scientific article published in December 2015

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

scientific article published on 17 June 2015

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data

scientific article

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016

Phylogenetic and epidemic modeling of rapidly evolving infectious diseases ⬇️

scientific article published on August 31, 2011

Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics

scientific article published on 20 February 2018

Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020

scientific article published on 14 October 2021

Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany

scientific article published on 29 May 2019

Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations

scientific article published in 2022

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

scientific article published on 26 February 2014

Spatiotemporal dynamics of Puumala hantavirus associated with its rodent host, Myodes glareolus

scientific article published on 29 May 2015

Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague

scientific article published on 11 April 2022

The contrasting phylodynamics of human influenza B viruses.

scientific article

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

article

Women in the European Virus Bioinformatics Center

scientific article published on 13 July 2022

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