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List of works by Roy R Chaudhuri

"Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence

scientific article published on 14 June 2017

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus

scientific article published on 5 April 2016

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

scientific article published on 27 August 2010

A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis

scientific article published in December 2005

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria

scientific article

Activity of Bdellovibrio hit locus proteins, Bd0108 and Bd0109, links Type IVa pilus extrusion/retraction status to prey-independent growth signalling.

scientific article

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

scientific article published on 15 January 2019

An analysis of type-III secretion gene clusters in Chromobacterium violaceum

scientific article

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes

scientific article

Bacterial FHA domains: neglected players in the phospho-threonine signalling game?

scientific article published on December 2002

Bacterial flagellar diversity in the post-genomic era.

scientific article

Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae

scientific article

Characterization of ISBth4, a functional new IS231 variant from Bacillus thuringiensis MEX312.

scientific article published on 29 October 2009

Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae

scientific article

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

scientific article published on 20 January 2010

Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605

scientific article

Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals

scientific article

Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice

scientific article published on 31 July 2009

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

scientific article

Corrigendum to ‘Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae’ [Veterinary Microbiology 178 (2015) 279–282].

scientific article published in September 2015

Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis

scientific article

Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States

scientific article published on December 2016

Draft Whole-Genome Sequences of 10 Aeromonas Strains from Clinical and Environmental Sources

scientific article published on 25 July 2019

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

scientific article published on 12 May 2015

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

scientific article

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

scientific article published on 06 April 2021

Gene content and diversity of the loci encoding biosynthesis of capsular polysaccharides of the 15 serovar reference strains of Haemophilus parasuis

scientific article published on 19 July 2013

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS) ⬇️

scientific article published on July 20, 2013

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91-/- phox Mice

scientific article published on 19 January 2016

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

scientific article

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

scientific article published on 21 December 2014

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival

scientific article

Genomic analysis of secretion systems

scientific article

Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.

scientific article published in September 2005

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

scientific article

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae

scientific article

Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae

scientific article

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom

scientific article published on 30 January 2020

Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12.

scientific article

MycoDB: an online database for comparative genomics of the mycobacteria and related organisms

scientific article published on January 2009

Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages

scientific article

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

scientific article

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

scientific article

Prevalence of pathogenicity island IICFT073 genes among extraintestinal clinical isolates of Escherichia coli

scientific article

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

scientific article published on 11 June 2019

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome

scientific article published on 4 August 2011

Regulators encoded in the Escherichia coli type III secretion system 2 gene cluster influence expression of genes within the locus for enterocyte effacement in enterohemorrhagic E. coli O157:H7.

scientific article

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

scientific article

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

scientific article published on 08 January 2019

Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain

scientific article published on 23 March 2017

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms

scientific article published on 28 December 2012

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing

scientific article

Structure and function of BamE within the outer membrane and the β-barrel assembly machine

scientific article

Supramolecular structure in the membrane of Staphylococcus aureus.

scientific article

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition

scientific article

The evolution of the Escherichia coli phylogeny

scientific article published on 14 January 2012

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid

scientific article published on 27 September 2019

The origins of acquired immune deficiency syndrome viruses: where and when?

scientific article published in June 2001

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

scientific article published in August 2008

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis

scientific article published on 24 December 2014

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

scientific article

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina

scientific article published on 22 February 2016

Use of proteins identified through a functional genomic screen to develop a protein subunit vaccine that provides significant protection against virulent Streptococcus suis in pigs

scientific article published on 4 December 2017

Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae

scientific article published on 06 March 2017

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis

scientific article

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

scientific article published on January 2004

xBASE, a collection of online databases for bacterial comparative genomics

scientific article

xBASE2: a comprehensive resource for comparative bacterial genomics.

scientific article published on 5 November 2007

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