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List of works by Manolis Maragkakis

A MicroRNA precursor surveillance system in quality control of MicroRNA synthesis

scientific article

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data

scientific article

Accurate microRNA target prediction correlates with protein repression levels

scientific article

Amyotrophic Lateral Sclerosis associated FUS mutation shortens mitochondria and induces neurotoxicity

scientific article published in Scientific Reports

CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite.

scientific article

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways

scientific article

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs

scientific article

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association

scientific article

DIANA-microT web server: elucidating microRNA functions through target prediction

scientific article published on 30 April 2009

DIANA-mirPath: Integrating human and mouse microRNAs in pathways

scientific article published on 12 May 2009

Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency

scientific article

FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns

scientific article published on 6 February 2013

Functional microRNA targets in protein coding sequences

scientific article published on 27 January 2012

Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome.

scientific article published on 14 February 2013

Lost in translation: an assessment and perspective for computational microRNA target identification

scientific article

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

scientific article

Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19

scientific article published on 07 October 2019

Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis

scientific article published on 5 March 2018

SamQL: a structured query language and filtering tool for the SAM/BAM file format

scientific article published on 02 October 2021

Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm

scientific article published on 7 March 2016

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

scientific article published on December 2011

The DIANA-mirExTra web server: from gene expression data to microRNA function

scientific article

The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing

scientific journal article

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