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List of works by Adam A Witney

A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae

scientific article published on 11 July 2016

A two-component system that controls the expression of pneumococcal surface antigen A (PsaA) and regulates virulence and resistance to oxidative stress in Streptococcus pneumoniae.

scientific article published on March 2004

Application of comparative phylogenomics to study the evolution of Yersinia enterocolitica and to identify genetic differences relating to pathogenicity

scientific article published on May 2006

BmuG@Sbase--a microarray database and analysis tool

scientific article published on January 2002

BμG@Sbase--a microbial gene expression and comparative genomic database

scientific article published on 24 September 2011

Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases

scientific article

Clinical use of whole genome sequencing for Mycobacterium tuberculosis

scientific article

Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source

scientific article

Construction of a Yersinia pestis microarray

scientific article published on January 2003

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules

scientific article

Design, validation, and application of a seven-strain Staphylococcus aureus PCR product microarray for comparative genomics

scientific article published on November 2005

Determining liver stage parasite burden by real time quantitative PCR as a method for evaluating pre-erythrocytic malaria vaccine efficacy

scientific article published in December 2001

Development and application of the active surveillance of pathogens microarray to monitor bacterial gene flux

scientific article

Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation

scientific article

Extensive horizontal gene transfer during Staphylococcus aureus co-colonization in vivo

scientific article published on 25 September 2014

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance

scientific article

Genetic variation in spatio-temporal confined USA300 community-associated MRSA isolates: a shift from clonal dispersion to genetic evolution?

scientific article

Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosa

scientific article published on 8 February 2014

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

scientific article

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

scientific article published on 21 March 2011

High prevalence of antibiotic-resistant Mycoplasma genitalium in nongonococcal urethritis: the need for routine testing and the inadequacy of current treatment options.

scientific article

Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data

scientific article

Identification of Streptococcus suis Meningitis through Population-Based Surveillance, Togo, 2010-2014.

scientific article published on July 2016

Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species

scientific article published in September 2005

Immunogenicity and protective efficacy of a Plasmodium yoelii Hsp60 DNA vaccine in BALB/c mice

scientific article

Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes

scientific article published on January 2006

Mycobacterium tuberculosis Is Resistant to Isoniazid at a Slow Growth Rate by Single Nucleotide Polymorphisms in katG Codon Ser315

scientific article

Novel antigen identification method for discovery of protective malaria antigens by rapid testing of DNA vaccines encoding exons from the parasite genome

scientific article published on March 2004

Occupational Tuberculosis despite Minimal Nosocomial Contact in a Health Care Worker Undergoing Treatment with a Tumor Necrosis Factor Inhibitor

scientific article

Posttranscriptional regulation of flagellin synthesis in Helicobacter pylori by the RpoN chaperone HP0958.

scientific article

Quantitation of liver-stage parasites by automated TaqMan real-time PCR.

scientific article published in January 2002

Staphylococcus aureus temperate bacteriophage: carriage and horizontal gene transfer is lineage associated

scientific article published on 8 February 2012

The distribution of mobile genetic elements (MGEs) in MRSA CC398 is associated with both host and country

scientific article

Transcriptional analysis of in vivo Plasmodium yoelii liver stage gene expression

scientific article

Transcriptional analysis of temporal gene expression in germinating Clostridium difficile 630 endospores

scientific article

Transcripts of developmentally regulated Plasmodium falciparum genes quantified by real-time RT-PCR.

scientific article

Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial

scientific article

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.

scientific article published on 19 September 2017

Within-host diversity of MRSA antimicrobial resistances

scientific article

XDR-TB transmission in London: Case management and contact tracing investigation assisted by early whole genome sequencing.

scientific article published on 13 June 2016

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